Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lapu5g00250 ATGGGTGCTTCGGGAAAGTGGTTCAAGTCACTCATTCCTTTTCGAAAGACCTCAACTTCAACAACTGATCAAGAGAAGGGTGGTGAAAACAAGAGCAAGAAGAAATGGAAGCTATGGAGGGCTTCTTCAGAAGGTTCCACCGTAAAGAAAGTTGGTGATGCTGCTGTACCTGATTCTTCCTTTACCTATGCGGTGGCTGTCATGGTTCCCAAAGATTTCAAGCTCATCAAGCAGGAATGGGCTGCCATCCGCATTCAGGCTGTGTTTCGAGCCTTCTTGGCTAGACGGGCTTTGAGGGCCCTGAGGGCAGTGGTAAGGCTGCAAGCTATTTTTCGAGGCCGGCTAGTCAGAAAGCAAGCAGCTGTCACTCTGAGGTGTATGCAGGCTCTAGTTAGAGTGCAGGCGCATGTGAGGGCAAGGAATGTGAGGAATTCTCCTGAAGGGAAGGCAGTGCAGAAATTACTTGATGAGTATCGCAACCTAGCCGATCCTTTTAAGGAAACTGAGAAAGGATGGTGTGACATTCCTGGAACCGTAGATGAAGTTAAAGCAAAGCTAAGAATGAGGCAGGAAGGAGCTATCAAGAGGGATAGAGCAATGGCATACTCTCTCTCCACACAGCAGTCAAGACTGATTGCCAGTCCAAATCCTAAAGCCACTAAGGCATTGACTCCTCTCAAGCATCACAACCTAAACAATAAGAGCTTGGGATGTAGCTTGTTAGAACGCTGGATGGAGGCCAATCCTTGGGAGAGTCCAATCTACAGGAAGAGTGAAGACCTTGTTCCGGCTTTTCAATCAAGAAAGAATGGTGTGACATCCAGGATTTCGGCAATCAAACCTCTAATAACCAGCCAATCCACTCCATCATCTTCGGCCATAAGTTCTGAATTCATGTGTGATGATAGCCCTGTGTCAACTTCTTATACAGCTGGATCTCCGTCTTTTCCATCCACCAATACTGTTTTAGTGGAAGCAACAGAGGAAAGAGATGTTCATCAACCAAGCTACATGAATTTGACAGAATCAACCAAGGCTAAACTGAAAACTTGCAGGAGTTCTTCGCAGAATTCGAAGAGTCTTGTACTTGAGGAGTGTGTGTCTCACAGCGCAACCACAGGTTTGATGAATGGAGATACTAGAAGCAGTTCTAATTCTGACCCTTTAGTTAACTTATGGAAGGATTCTTGTGCAACACCTCTGAGGGCAAGTTATCAAAAACGGCAAATTGGGGTATGA 1239 0.4592 MGASGKWFKSLIPFRKTSTSTTDQEKGGENKSKKKWKLWRASSEGSTVKKVGDAAVPDSSFTYAVAVMVPKDFKLIKQEWAAIRIQAVFRAFLARRALRALRAVVRLQAIFRGRLVRKQAAVTLRCMQALVRVQAHVRARNVRNSPEGKAVQKLLDEYRNLADPFKETEKGWCDIPGTVDEVKAKLRMRQEGAIKRDRAMAYSLSTQQSRLIASPNPKATKALTPLKHHNLNNKSLGCSLLERWMEANPWESPIYRKSEDLVPAFQSRKNGVTSRISAIKPLITSQSTPSSSAISSEFMCDDSPVSTSYTAGSPSFPSTNTVLVEATEERDVHQPSYMNLTESTKAKLKTCRSSSQNSKSLVLEECVSHSATTGLMNGDTRSSSNSDPLVNLWKDSCATPLRASYQKRQIGV* 413
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lapu5g00250 412 MobiDBLite consensus disorder prediction 17 37 - -
Lapu5g00250 412 ProSiteProfiles IQ motif profile. 102 129 IPR000048 GO:0005515
Lapu5g00250 412 PANTHER IQ-DOMAIN 5-RELATED 1 375 - -
Lapu5g00250 412 Gene3D - 76 127 - -
Lapu5g00250 412 ProSiteProfiles IQ motif profile. 78 106 IPR000048 GO:0005515
Lapu5g00250 412 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 73 120 IPR027417 -
Lapu5g00250 412 Pfam IQ calmodulin-binding motif 102 119 IPR000048 GO:0005515
Lapu5g00250 412 Pfam IQ calmodulin-binding motif 80 99 IPR000048 GO:0005515
Lapu5g00250 412 SMART iq_5 77 99 IPR000048 GO:0005515
Lapu5g00250 412 SMART iq_5 100 121 IPR000048 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lapu5g00250 Lapu-Chr5 2043281 2045757 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lapu5g00250 1 392 IQD Protein Family AT2G26180 44.844 4.57e-90 276
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lapu5g00250 - - gmx:100788715 634.024
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lapu5g00250 5 2043281 2045757 Lapu5g00250 5 2043281 2045757 ECH
Lapu10g00455 10 6936033 6938929 Lapu5g00250 5 2043281 2045757 PCT