LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Lapu5g00246	ATGGATTATCCTTATCAGCATCACTTGCAATTTGAATCTGAACCTGGCGCCTACGGTGGTGATGCCAATGATGACCTCGTAAAACCCTCCTCCAATCCTCGTGATTCGTCTTCAGGGAAACTCTTCGTCGGGGGCATTTCGTGGGAGACTTCTCAAGAATCATTTTTTAATTACTTCAGCAAATATGGAGAAGTAACAGATTCAGTGATAATGACAAATAAACTTTCTGGAAGGCCACGCGGGTTTGGCTTTGTAACATTTGCCGATTCAACTGTAGCAGATGAAGTTTTGGCCCAGGAGCATACCATTGATGGCAGAGTGGTAGAAGTGAAGAGGACAGTCCCTAGGGAAGACATGGAAGTTATTGGAGTATTAAAAACAAAGAAGATATTTGTAGGGGGAATACCCCAACTTTTCACTGATGATGAGTTGAGGGGATACTTTTCACTTTATGGCGATGTTATTGAGTGCCAAATCATGTTAGATCACAATACTGGGCGATCTAGAGGTTTTGGATTTGTCACTTTTGACACTGAAGATTCAGTCGAAAAGGTTTTTTCAGTGGGAAGAATACATGGAATGGGAGGCAAGCTGGTTGAAATTAAGAGAGCTGAGCCCAAAAGATCTGGAGTTGATCACATCAGTACCTCACGAAAGTCCTATGGTGGTTTTGGTAATGGAATGGATGGATATGGTGGGAATAGTTCTAGAAATCGTAATCATGGAAAAAGAGGTGGACAGTATACGGACTCTGGAATGAACGGACCATATGGCCACTTTGAGGGAAGCTTTGGTGGAAGTGCTGCCTCTGTTTATGGTGGCTATTGTGGATATGGTGGGCCAATGTATTTCTATGGCGGCTATGGACTCAATTCTTACGGTAATCCTGGGGTTTATGGCGGTGGCACTACTTCCAATGCAGATGGTAGTGCATATGGAAGAAACGGTAGTTTCAATCGCACCAGTGGCTATGATGGTGGCAAAGGGACTGAGATGGACGATGGTCCTACGACTGGAAGGTACCATCCTTACCGGAAGTGA	1041	0.4419	MDYPYQHHLQFESEPGAYGGDANDDLVKPSSNPRDSSSGKLFVGGISWETSQESFFNYFSKYGEVTDSVIMTNKLSGRPRGFGFVTFADSTVADEVLAQEHTIDGRVVEVKRTVPREDMEVIGVLKTKKIFVGGIPQLFTDDELRGYFSLYGDVIECQIMLDHNTGRSRGFGFVTFDTEDSVEKVFSVGRIHGMGGKLVEIKRAEPKRSGVDHISTSRKSYGGFGNGMDGYGGNSSRNRNHGKRGGQYTDSGMNGPYGHFEGSFGGSAASVYGGYCGYGGPMYFYGGYGLNSYGNPGVYGGGTTSNADGSAYGRNGSFNRTSGYDGGKGTEMDDGPTTGRYHPYRK*	347

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Lapu5g00246	346	SMART	rrm1_1	129	202	IPR000504	GO:0003723
	Lapu5g00246	346	SMART	rrm1_1	40	111	IPR000504	GO:0003723
	Lapu5g00246	346	PANTHER	RNA-BINDING (RRM/RBD/RNP MOTIFS) FAMILY PROTEIN	31	345	-	-
	Lapu5g00246	346	ProSiteProfiles	Eukaryotic RNA Recognition Motif (RRM) profile.	39	115	IPR000504	GO:0003723
	Lapu5g00246	346	Gene3D	-	124	259	IPR012677	-
	Lapu5g00246	346	CDD	RRM1_hnRNPA_hnRNPD_like	41	111	-	-
	Lapu5g00246	346	ProSiteProfiles	Eukaryotic RNA Recognition Motif (RRM) profile.	128	206	IPR000504	GO:0003723
	Lapu5g00246	346	FunFam	Heterogeneous nuclear ribonucleoprotein 1	38	119	-	-
	Lapu5g00246	346	SUPERFAMILY	RNA-binding domain, RBD	31	119	IPR035979	GO:0003676
	Lapu5g00246	346	SUPERFAMILY	RNA-binding domain, RBD	126	234	IPR035979	GO:0003676
	Lapu5g00246	346	MobiDBLite	consensus disorder prediction	12	39	-	-
	Lapu5g00246	346	Pfam	RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain)	41	108	IPR000504	GO:0003723
	Lapu5g00246	346	Pfam	RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain)	130	185	IPR000504	GO:0003723
	Lapu5g00246	346	MobiDBLite	consensus disorder prediction	310	324	-	-
	Lapu5g00246	346	FunFam	RNA-binding (RRM/RBD/RNP motifs) family protein	120	255	-	-
	Lapu5g00246	346	MobiDBLite	consensus disorder prediction	231	247	-	-
	Lapu5g00246	346	Gene3D	-	37	120	IPR012677	-
	Lapu5g00246	346	MobiDBLite	consensus disorder prediction	310	346	-	-
	Lapu5g00246	346	MobiDBLite	consensus disorder prediction	222	250	-	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Lapu5g00246	Lapu-Chr5	2022908	2026666	Transposed

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Lapu5g00246	41	216	Eukaryotic Initiation Factors Gene Family	AT1G71770	25.641	2.23e-13	69.3

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Lapu5g00246	K12741		-	gmx:100818080	520.39