Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lapu5g00241 ATGAGAGAAGATGATGAAGAAGGGTTTGATGTTCCAATAACCATGTCTAATTTGACTTCTGCATCCGGTGAAGCTAGTGCTTCTTCAGGCAACAGAACGGAAATTGGTTCAGATTACTCACAACCATACTTTGCTACTCCACCAGCTCAAACCCAGACTCCACAAAAGAAAAAGAGAAACCTTCCAGGCAACCCAGACCCGGAGGCTGAAGTTGTCGCGTTGTCTCCAAAGACTCTCTTGGCCACGAATAGGTTTATTTGTGAGATCTGCAACAAAGGGTTTCAAAGAGATCAGAATCTTCAACTTCACAGAAGAGGCCACAATTTACCATGGAAGCTGAAGCAGAGATCGAGCAAAGAGATAAAGAAGAAGGTGTATGTGTGTCCAGAAACAACTTGTGTCCATCACGACCCTTCAAGGGCCCTGGGGGACCTAACTGGCATCAAGAAGCACTTCTGCAGAAAGCACGGCGAGAAGAAGTGGAAATGTGACAAGTGCTCCAAGAAGTATGCTGTTCAATCAGACTGGAAAGCTCACTCCAAGACCTGTGGCACAAGAGAGTACAGATGTGACTGTGGAACTCTCTTCTCAAGGAGGGACAGTTTCATAACCCACAGAGCCTTCTGTGATGCATTAGCAGAGGAGAGTGCAAGATCTGTGACAGGCATAGACATAGGCATAGGCATACCCAACAACTCAGCTCCAACTGCAGCAACACTTCATCAACAACCTGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGGAGTAGTGATCTCTTCATCCTCTCATCATCAAGACATCCATGGTAACAATTTCCCATTGAAGAAAGAGCAACAAGGTTTCATGCCCCCTTGGCTTGGACAACCACCCTCCACCATTGATCTCTCCTCCTCATCATCATCATTCTTCTCTCACCAGGATCATGCCAGTATTCTCCATGAAAACCCTAACCCTAGAGGTGGTTGTGGAGGTGGTCCCACTCTCCCTCCCTACCCAACAGCGCCTTCCCCTCCTCACATGTCAGCCACAGCATTGCTGCAGAAAGCAGCTCAAATGGGAGCTACCATGAGCAAAACAAGCTCCATGATTAGGACCCACCAACAGGCTCACGTGTCTGCTGACTCTTTGAATTTGTCTTCACGTGACGACCAGATGACCCCCACTTCCAACACCACCACTCCCCATGGCTTGGTACCTTTCGGGAATAAAGCTGTTCCTGGTGTTGGTGTTGGTGTTTCTCCATCTCTCCTTCACCATGTTATCAACTCTTTCTCCTCCCCTTTTGAAGGGACTTCTTTCGAGGACCCTTTTGAAGGTGCTGTGACGAAAACAACCGCCGCTGATGACGGTGCCGGTGGTGCCGGCGGAGGAAATTATAATGAGGCCATGACCAGAGATTTCTTGGGTCTTAGACCCCTCTCTCACACTGATATTCTCAATATTGCTGGCATGGGAAACTGCATGAACTCCCAACACAACCAAACCCAAAACCCTTGGCAAGGTTAG 1509 0.4858 MREDDEEGFDVPITMSNLTSASGEASASSGNRTEIGSDYSQPYFATPPAQTQTPQKKKRNLPGNPDPEAEVVALSPKTLLATNRFICEICNKGFQRDQNLQLHRRGHNLPWKLKQRSSKEIKKKVYVCPETTCVHHDPSRALGDLTGIKKHFCRKHGEKKWKCDKCSKKYAVQSDWKAHSKTCGTREYRCDCGTLFSRRDSFITHRAFCDALAEESARSVTGIDIGIGIPNNSAPTAATLHQQPAAAAAAAAAAAGVVISSSSHHQDIHGNNFPLKKEQQGFMPPWLGQPPSTIDLSSSSSSFFSHQDHASILHENPNPRGGCGGGPTLPPYPTAPSPPHMSATALLQKAAQMGATMSKTSSMIRTHQQAHVSADSLNLSSRDDQMTPTSNTTTPHGLVPFGNKAVPGVGVGVSPSLLHHVINSFSSPFEGTSFEDPFEGAVTKTTAADDGAGGAGGGNYNEAMTRDFLGLRPLSHTDILNIAGMGNCMNSQHNQTQNPWQG* 503
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lapu5g00241 502 MobiDBLite consensus disorder prediction 1 69 - -
Lapu5g00241 502 MobiDBLite consensus disorder prediction 13 59 - -
Lapu5g00241 502 MobiDBLite consensus disorder prediction 349 398 - -
Lapu5g00241 502 MobiDBLite consensus disorder prediction 324 338 - -
Lapu5g00241 502 Gene3D Classic Zinc Finger 64 136 - -
Lapu5g00241 502 Gene3D Classic Zinc Finger 154 219 - -
Lapu5g00241 502 FunFam protein indeterminate-domain 12-like 64 132 - -
Lapu5g00241 502 ProSitePatterns Zinc finger C2H2 type domain signature. 87 107 IPR013087 -
Lapu5g00241 502 MobiDBLite consensus disorder prediction 312 399 - -
Lapu5g00241 502 SMART c2h2final6 161 181 IPR013087 -
Lapu5g00241 502 SMART c2h2final6 85 107 IPR013087 -
Lapu5g00241 502 SMART c2h2final6 126 156 IPR013087 -
Lapu5g00241 502 ProSiteProfiles Zinc finger C2H2 type domain profile. 85 107 IPR013087 -
Lapu5g00241 502 SUPERFAMILY beta-beta-alpha zinc fingers 84 181 IPR036236 -
Lapu5g00241 502 FunFam protein indeterminate-domain 5, chloroplastic-like 139 218 - -
Lapu5g00241 502 PANTHER SERINE/THREONINE-PROTEIN KINASE RIO 38 491 IPR031140 -
Lapu5g00241 502 Pfam Zinc-finger double-stranded RNA-binding 85 107 IPR022755 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lapu5g00241 Lapu-Chr5 1994078 1997968 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lapu5g00241 15 502 IDZ Gene Family AT3G13810 47.905 5.42e-139 408
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Lapu5g00241 zf-C2H2_jaz 7.4e-05 CL0361
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lapu5g00241 K25870 - gmx:100819692 667.922
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lapu5g00241 5 1994078 1997968 Lapu10g00465 10 7026823 7030503 PCT