Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lapu5g00239 ATGGCAACCAACCATGTAGAAGAACCACCCAAAAGGCTCCAATACCCATTGGACTCTTCCTCCTACAAGCTCCTCAACGAGATCGGCGCCGGCGTCAGCGCCGTCGTCTACAAGGCCATCTGCATCCCCATGAACTCCGCCGCGGTGGCAATCAAATCCATAGACCTCGACCGTTCCCGCCCCGACTTGGACGACGTTCGCCGCGAGGCCAAAACCCTATCCCTCCTTTCTCACCCTAACATCCTCAAAGCACACTGCTCCTTCACCGTCGATCGTCGCCTCTGGGTGGTGATGCCCTTCATGGCCGCGGGATCTCTCCAATCCATCATCTCTCACTCCCACCCCGACGGCTTAACCGAACCCTGCATCGCGGTGGTTCTCAGAGACACCCTCAACGCCCTCTCCTACCTCCATGGCCAGGGTCACCTCCACCGAGACGTAAAAGCCGGAAACATCCTTGTTGACACAAACGGACAAGTGAAGCTTGCGGATTTCGGCGTGTCGGCTTCGATCTACGAGTCCTCCACGTGTTCCTCTCTCAAGTTCACCGACGTTGCCGGCACGCCGTATTGGATGGCTCCTGAGGTGATTCACTCGCACACAGGATACAGTTTCAAGGCTGATATATGGTCCTTTGGTATAACCGCTTTGGAGCTCGCGCATGGAAGGCCTCCTCTCTCTCACCTTCCACCTTCCAAGTCCATGATGCTCAAGATCACCAAGCGATTTCGTTTCTCCGATTTTGATAAGTATAGAAAGGGTAATGGGAAGAAGTTCTCCAAGGCGTTCAAGGACATGGTGGCTTCTTGTCTAGACCAAGATCCTTCCAAAAGACCCACTGCTGATAAGTTGCTGAAACATCCCTTCTTTAAAAACTGTAAAGGAACTGATTTTCTGGTGAAGAACGTGCTCCAAGGGTTGCCCAGTGTGGAGAAAAGGTATAAGGAGAGCAAGGTCAATGAGCATGCAGATGGGGGCGACCATGATGATGATGATGATGATGCAGAAGACCCCGCCATGCAGGTGAAGGAGAGAAGGATCAGTGGGTGGAACTTTAACCAAGACGGGTTGGAGCTTGATCCTGTGTTTCCAAACGATGATGCGGCGGCTAAAGAGGTTGGGTTTGAAGGGGAAACGGTTCATAGTGGGTGGCGGTGGCGGTGGTGTGAAGAGGGAAAAGATGTTGGCTACTCTGAATGTGCTGAAAGGGAGCTTGGAACAAGAGCTGTTGGAAGTGAATTTTCTGGTGAATACGATACGAGGAGAAGAGGAGAGTGA 1278 0.5258 MATNHVEEPPKRLQYPLDSSSYKLLNEIGAGVSAVVYKAICIPMNSAAVAIKSIDLDRSRPDLDDVRREAKTLSLLSHPNILKAHCSFTVDRRLWVVMPFMAAGSLQSIISHSHPDGLTEPCIAVVLRDTLNALSYLHGQGHLHRDVKAGNILVDTNGQVKLADFGVSASIYESSTCSSLKFTDVAGTPYWMAPEVIHSHTGYSFKADIWSFGITALELAHGRPPLSHLPPSKSMMLKITKRFRFSDFDKYRKGNGKKFSKAFKDMVASCLDQDPSKRPTADKLLKHPFFKNCKGTDFLVKNVLQGLPSVEKRYKESKVNEHADGGDHDDDDDDAEDPAMQVKERRISGWNFNQDGLELDPVFPNDDAAAKEVGFEGETVHSGWRWRWCEEGKDVGYSECAERELGTRAVGSEFSGEYDTRRRGE* 426
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lapu5g00239 425 ProSitePatterns Protein kinases ATP-binding region signature. 28 52 IPR017441 GO:0005524
Lapu5g00239 425 Gene3D Phosphorylase Kinase; domain 1 11 100 - -
Lapu5g00239 425 MobiDBLite consensus disorder prediction 314 337 - -
Lapu5g00239 425 Gene3D Transferase(Phosphotransferase) domain 1 104 339 - -
Lapu5g00239 425 ProSiteProfiles Protein kinase domain profile. 22 290 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lapu5g00239 425 Pfam Protein kinase domain 22 290 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lapu5g00239 425 PANTHER SERINE/THREONINE-PROTEIN KINASE FRAY2 14 367 IPR047173 GO:0043539
Lapu5g00239 425 SMART serkin_6 22 290 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lapu5g00239 425 SUPERFAMILY Protein kinase-like (PK-like) 20 303 IPR011009 -
Lapu5g00239 425 FunFam Serine/threonine-protein kinase BLUS1 104 334 - -
Lapu5g00239 425 FunFam Serine/threonine-protein kinase BLUS1 11 100 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lapu5g00239 Lapu-Chr5 1971149 1972622 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lapu5g00239 12 372 MAP Kinase Kinase Kinase Kinase AT4G14480 65.323 5.11e-175 496
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK STE_STE20-Fray Lapu5g00239 Pkinase 9.6e-61 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lapu5g00239 K08835 - gmx:100820227 671.003