Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lapu5g00226 ATGGAGGAAATGCCTAAGTTCCTCATCCATGGAACAATTGAAGCTACCATCTTCAATGCTACACCTTACTCACCTTTGTTTCCCTTCAATTGTGTATATACAAAAGGAAAGCCTGCTTATGTGTCCATCAGGATAGGCAAGCAGAAGGTGGCGAAAACGACCCAAGAACGTGAACGTGTGTGGAACCAGACCTTTCAGATTCAGTGTGCTCATCCAGAAGATTCAACTATCACCATTACACTGAAGACATCATGCTTCATTTTGGGGAAATTCCACTTGCAGGCCAAGAAGTTGAAGAAAGAGAGTTTGATCAATGGAGTATTCCCTCTCCTCATGGAAAATGGAAAACCAAATCCACAACTAAAATTAAGATTTATGTTGTGGTTCAAGCCAGCAGAAATGGAACCAAGTTGGACAAAGATACTAAGCAATGGGGAGTTTCAAGGGCTGAGGGATGCTACATTCCCACAGAGGTCCAATTGCCAGGTTAAACTCTATCATGATGCTCACCATTCATCTACCTTCCACCCTCCTTTTGACCTTTGCGGCACTCCAATAAAGCTGTGGGAAGATGTCTATAAAGCCATTGAGGGTGCAAAATATTTGATTTATATTGCAGGCTGGTCTTTCAATCCCAAGATGGTTCTGGTTAGGGATCCTCAAACAGAAATCCCTCATGCTAGGGAGATAAACCTGGGTGAGTTATTGAAGAAGAAGGCAGACGAAGGAGTGGCTGTGAGGATTATGATTTGGGATGATGAAACATCTTTGCCTTTTATTAAGAACAAAGGTGTGATGAACACTCATGATGAGGACGCTTTTGCATACTTTAAACACACTAAAGTAATATGCAGAAAGTGTCCCAGGTTACACCACAAGTTTCCCACGTTCTTTGCTCACCATCAGAAGACCATAACTGTGGACACCAGAACACCCTACTCTGTTCATGCCAGAGAAATTATGAGCTTTTTGGGTGGTTTAGATTTGTGTGGTGGCCGATATGACACAGAAAAACACTCATTGTTTCAAACACTTGCTGAGGAATCCGATTACCATGATTTCTACCAGACAAACATTGCACAAGCTAGCCTCAAGAAAGGAGGGCCAAGAGAGCCTTGGCATGATGCTCATGCTTGTGTTATTGGTGAGGCTGCTTGGGATGTGTTAACCAATTTTGAGCAAAGATGGACAAAGCAGTGTGATCCTTCTCTTCTAGTTCCTGCCAACAGTTTGGAAAATCTCATTCCCACATGCTCAAGCACTCCAGTAGAAAGGAATTGGAAAGTTCAAGTATACAGGTCAATTGACCATGTATCTGCTAGCCAGTTGTTTAGAAAGCTAACTGTGGAGAGAAGCATCCATGAAGCTTATGTTGAAGCAATTAGGCGTGCCGATAGGTTTGTGTACATTGAAAACCAATATTTTGTTGGAGGCTGCCATTTGTGGCAAGAAGATAAGCATAGTGGATGCAGCAATCTGATTCCGGTTGAGATTGCACTCAAGGTGGTTAGTAAGATCAAAGCAAGAGAGAGGTTTGCAGTGTACATAGTCATTCCGATGTGGCCAGAAGGAGTGCCTGAAAGTGAACCAGTTCAAGATATACTTCACTGGACAAGAGAAACAATGACAATGATGTATAGGTTGATTGGAGAAGCAATAATAGAAAGTGGGGAGCCAGGGCATCCAAGAGATTACTTGAATTTCTTCTGCCTTGCAAATAGGGAAAAGAAGGAAAAAGAGGAGTTTCTTCCTCCACTTTCTCCTCATCCTGCAACACAATACTGGAATGCACAAAAGAATAGGAGGTTCCCGATTTATGTCCACTCAAAGATGATGATAGTGGACGACATATACATATTAATAGGATCAGCCAATGTAAACCAAAGATCCATGGATGGACAAAGGGACACTGAGATTGCCATAGGGGCTTACCAGTTTCAAGATGGAGTTGATCGCCACATAAACCATGGCGATATTCATGCATACAGAATGTCACTGTGGTATGAGCACACGGGAAGTGCTGAGGAATTGTTCTTAGAGCCAGAAAGTTTGGCATGTGTGCAGAGAATGAGATCAATAGGGGATCATATGTGGGAAATGTACAGTAGTGAAGAAATTGTGGACATGGAAGGTGTGCACCTTGTAAGGTACCCTGTGAAAATAACTCAAGAAGGGTATGTGGAGGATCCAGATGATGGTGGGGATCATTTTCCTGATACAAAATCTCCAGTCAGGGGGAAGAGATCAAAACTCTTAACCCCTGTCTTTACCACTTAA 2277 0.426 MEEMPKFLIHGTIEATIFNATPYSPLFPFNCVYTKGKPAYVSIRIGKQKVAKTTQERERVWNQTFQIQCAHPEDSTITITLKTSCFILGKFHLQAKKLKKESLINGVFPLLMENGKPNPQLKLRFMLWFKPAEMEPSWTKILSNGEFQGLRDATFPQRSNCQVKLYHDAHHSSTFHPPFDLCGTPIKLWEDVYKAIEGAKYLIYIAGWSFNPKMVLVRDPQTEIPHAREINLGELLKKKADEGVAVRIMIWDDETSLPFIKNKGVMNTHDEDAFAYFKHTKVICRKCPRLHHKFPTFFAHHQKTITVDTRTPYSVHAREIMSFLGGLDLCGGRYDTEKHSLFQTLAEESDYHDFYQTNIAQASLKKGGPREPWHDAHACVIGEAAWDVLTNFEQRWTKQCDPSLLVPANSLENLIPTCSSTPVERNWKVQVYRSIDHVSASQLFRKLTVERSIHEAYVEAIRRADRFVYIENQYFVGGCHLWQEDKHSGCSNLIPVEIALKVVSKIKARERFAVYIVIPMWPEGVPESEPVQDILHWTRETMTMMYRLIGEAIIESGEPGHPRDYLNFFCLANREKKEKEEFLPPLSPHPATQYWNAQKNRRFPIYVHSKMMIVDDIYILIGSANVNQRSMDGQRDTEIAIGAYQFQDGVDRHINHGDIHAYRMSLWYEHTGSAEELFLEPESLACVQRMRSIGDHMWEMYSSEEIVDMEGVHLVRYPVKITQEGYVEDPDDGGDHFPDTKSPVRGKRSKLLTPVFTT* 759
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lapu5g00226 758 Gene3D Endonuclease Chain A 417 648 - -
Lapu5g00226 758 ProSiteProfiles Phospholipase D phosphodiesterase active site profile. 603 630 IPR001736 GO:0003824
Lapu5g00226 758 Pfam C2 domain 39 110 IPR000008 -
Lapu5g00226 758 Pfam Phospholipase D C terminal 675 747 IPR024632 -
Lapu5g00226 758 ProSiteProfiles Phospholipase D phosphodiesterase active site profile. 296 333 IPR001736 GO:0003824
Lapu5g00226 758 Pfam PLD-like domain 602 648 IPR025202 -
Lapu5g00226 758 PANTHER PHOSPHOLIPASE D 8 742 IPR015679 -
Lapu5g00226 758 Pfam Phospholipase D Active site motif 297 333 IPR001736 GO:0003824
Lapu5g00226 758 Gene3D Endonuclease Chain A 182 416 - -
Lapu5g00226 758 SUPERFAMILY Phospholipase D/nuclease 425 687 - -
Lapu5g00226 758 PIRSF PLD_plant 3 758 IPR011402 GO:0004630|GO:0005509|GO:0016020|GO:0046470
Lapu5g00226 758 SMART pld_4 296 333 IPR001736 GO:0003824
Lapu5g00226 758 SMART pld_4 603 630 IPR001736 GO:0003824
Lapu5g00226 758 SUPERFAMILY C2 domain (Calcium/lipid-binding domain, CaLB) 38 132 IPR035892 -
Lapu5g00226 758 SUPERFAMILY Phospholipase D/nuclease 145 407 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lapu5g00226 Lapu-Chr5 1856893 1859821 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lapu5g00226 31 758 Phospholipase D Gene Family (Wang group) AT1G55180 61.911 0.0 959
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lapu5g00226 K01115 - gmx:100807431 1412.51
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lapu5g00226 5 1856893 1859821 Lapu5g00226 5 1856893 1859821 ECH
Lapu5g00226 5 1856893 1859821 Lapu10g00480 10 7165598 7169289 PCT