Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lapu5g00224 ATGGACGCCGAAGCGGATTCAACTCAAACCCCTACTATAAGACACAAATGCTCGGCATGCTATAAACAATTCAAGAAGAAAGAGCATCTAATTGAGCACATGAAAACCTCAAACCATTCCGTCCATCAGCCTAGGTGTGGGGTCTGTCAAAAACACTGCAAATCTTTTGAGTCTCTGAGGGAACATCTCACTGGTCCTTTGCCAAAAGGAGTTTGTTCAAAGATTTTCTCTCAACAGGGCTGTCAACTTTGCTTGGTACTATTTGATAGCCCCGGGTCTCTCATTGGTCATAGAGAAACATGTCGCTTATTTGCCCCTACTCCTCTGGAAACAAGAGAACTGCCCTATATAGATTCCCAATTTGACTGTCAAGATTCTTCTGATGAAAACCATGCTGGCAGGGGCCCTCGAGGAGCAGTTGCAATGGACTGTGAAATGGTTGGTGGTGGAAGTGATGGTTCTCTGGAACTTTGTGCAAGAGTATGTTTGGTTGATGAAGATGAGAACTTAATCTTTCATACATATGTACAACCTGAAATACCTGTTACTAATTACAGATATGATATAACTGGATTGACAGAAGAACATCTCAGAAATGCTATGCCCCTTTATGAAGTTCGAGAAAAGGTATTGCAAATACTATACAATGGAGAATGCATCGGCAAAGTTAGACTAAATGGTGGAAAGGCCAGGCTTCTTGTGGGGCATGACATAGCACACGATTTAGATTGCTTGAATATGAATTATCCTGATCATATGCTAAGAGACACTGCAAAGTACCGTCCGTTGATGAAGACAAATTTGGTCAGCCATTCGCTCAAGTATCTCACCCGAACATATCTTGGTTATGATATCCAATCCGGCACTCATGACCCGTATGAAGATTGTATTTCTGTCATGAGACTATACAAGAGAATACGAGCTCAAATTCATCCAGAGGAAGGCCATGAAACGTCGACTCTGAGTAACAACTTTCTTCGTTTGCCTTGTAGCTGGAGATCCAGGGAATTTGACAACCTCACTCCAGATCAACTCTATGCCATGTCAAGATCGGATTACAAGTGTTGGTGCTTGGATTTGAGGCCTAGATTGGCATCCTGCTTACTTTGA 1110 0.4243 MDAEADSTQTPTIRHKCSACYKQFKKKEHLIEHMKTSNHSVHQPRCGVCQKHCKSFESLREHLTGPLPKGVCSKIFSQQGCQLCLVLFDSPGSLIGHRETCRLFAPTPLETRELPYIDSQFDCQDSSDENHAGRGPRGAVAMDCEMVGGGSDGSLELCARVCLVDEDENLIFHTYVQPEIPVTNYRYDITGLTEEHLRNAMPLYEVREKVLQILYNGECIGKVRLNGGKARLLVGHDIAHDLDCLNMNYPDHMLRDTAKYRPLMKTNLVSHSLKYLTRTYLGYDIQSGTHDPYEDCISVMRLYKRIRAQIHPEEGHETSTLSNNFLRLPCSWRSREFDNLTPDQLYAMSRSDYKCWCLDLRPRLASCLL* 370
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lapu5g00224 369 ProSiteProfiles Zinc finger C2H2 type domain profile. 15 44 IPR013087 -
Lapu5g00224 369 CDD REX4_like 140 304 IPR037431 GO:0006364|GO:0008408
Lapu5g00224 369 PANTHER RNA EXONUCLEASE REXO1 / RECO3 FAMILY MEMBER-RELATED 18 312 IPR047021 GO:0004527
Lapu5g00224 369 SMART exoiiiendus 138 312 IPR013520 -
Lapu5g00224 369 Gene3D - 135 320 IPR036397 GO:0003676
Lapu5g00224 369 ProSitePatterns Zinc finger C2H2 type domain signature. 17 39 IPR013087 -
Lapu5g00224 369 Gene3D Classic Zinc Finger 2 65 - -
Lapu5g00224 369 Pfam Exonuclease 140 303 IPR013520 -
Lapu5g00224 369 SUPERFAMILY Ribonuclease H-like 140 310 IPR012337 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lapu5g00224 Lapu-Chr5 1837786 1848130 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lapu5g00224 1 359 C2H2 Transcription Factor Family AT3G27970 51.667 3.81e-135 388
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lapu5g00224 K18327 - gmx:100788682 675.241