Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lapu5g00223 ATGAGTCGTGAACAGCAGAAGCGAGGGAAGCAAGAAATATGTTCTGATGGAGCTGAAAAGGTTATTGTTGCGGTCAAGGCATCAAAGGAAATTCCCAAGACTGCCCTTGTTTGGTCCCTAACTCATGTTGTGCAACCTGGCGATTGCATTACACTGCTAGTGGTTGTACCACCACAAAGTTCGGGCAGAAGATTATGGGGTTTTCCAAGATTTTCTGGCGATTGTGCCAGTGGTCATAAGAAATCTTCTTCAGGATCATCAAGTTCAGAACAGAAGAGTGATATCACTGATTCTTGCTCTCAAATGATCCTTCAGCTCCATGATGTCTATGATCCTAATAAGATAAATGTGAAGATTAAAATTGTTTCTGGATCACCCTGTGGAGCAGTGGCTGCGGAAGCCAAGAAAGCCGAAGCCAATTGGGTTGTTTTAGACAAACAGCTCAAACATGAGGAAAAACAATGTATGGAAGAGCTGCAGTGCAACATTGTGGTTATGAAGCGTTCGCAACCTAAGGTACTACGCTTGAATTTGGTTGGAACGAAAAAGAAAGATCTTGAAGAATTATGTTCACTACCTTCCGAACAAGATCAGATGCTTGGAAAACAAACTAAGAATAAGAATGATTCTTTAAATTCCTTAAAAGGTCCAGTTGTCACTCCATCTAGCAGCCCTGAGCTAGGGACACCGTTCACTGCAACTGAAGCTGGCACTTCATCGGTTTCAAGCTCTGATCAAGGAACTTCACCATTTTTCATCTCTGAGATGAACAGTGAGTCGAAAAAAGAGGAAACTATCAAAGAAAATCCAGAACTCAATGATTCTATATCAGACACTGATAGTGAAAACTTGTCCAATTCTTCGGCAAGCTTGAGATTCCAGCCATGGATCACTGATTTACTTCTGCATCAACGATCATCTCATCCTAAGGAAGAAAGAACAGGGAGGTCTCATAATAGGATTCAATTGTCTACTACTAGAGCTTTGCTAGAAAAGTTCTCAAGACTTGATAGAGAAGCTGAAATTGAAATGTCTACCTATAAGACTGACTTGGATTTCAGTGGAAATGTACGAGAAGCAATAGCATTATCTAGAAATACTCCACCCGGTCCACCTCCCCTGTGTTCAATCTGTCAACACAAGGCTCCTGTTTTTGGAAAACCTCCCAGGTGGTTCAGCTATGCTGAATTGGAGCTTGCCACTGGGGGATTTTCACAAACCAATTTCTTGGCTGAAGGAGGATTTGGATCTGTTCACAGGGGGGTTCTACCGGATGGACAAGTTGTTGCTGTGAAGCAACATAAATTGGCCAGTTCTCAGGGTGATCTTGAATTCTGCTCAGAGGTAGAAGTCCTGAGCTGTGCTCAGCACCGAAATGTTGTAATGTTGATTGGTTTCTGTATAGAGGATAAGAGAAGGCTATTGGTTTATGAGTACATATGTAATGGGTCATTGGATTCTCATTTATATGGGAGACAACGAAAACCATTAGAGTGGTCTGCCCGGCAAAAAGTTGCTGTTGGAGCTGCCAGAGGGTTGCGATATCTTCATGAAGAGTGCAGAGTGGGTTGCATTATCCACCGTGACATGCGCCCAAACAACATTCTTATCACTCATGATTTTGAACCACTGGTTGGTGATTTTGGACTGGCAAGGTGGCAGCCTGATGGTGATACAGGAGTGGAAACTAGAGTAATTGGAACATTTGGGTATTTGGCTCCTGAATATGCCCAAAGTGGCCAAATTACTGAGAAGGCTGATGTTTATTCATTCGGTGTGGTATTAGTGGAACTTGTTACAGGGCGAAAGGCTGTGGATCTCAATAGGCCAAAGGGACAGCAGTGTCTTACTGAGTGGGCACGACCACTGTTAGAAGAATATGCCATTGAGGAACTGATTGATCCAAGGTTGGGAAGTCACTATTCGGAACATGAGGTCTATTGCATGCTGCATGCTGCCTCATTATGCATAAGGAGAGATCCTTATTCTAGACCGCGCATGTCACAGGTTCTGCGAATACTGGATGGTGACACGGTTATGGACCCAAATTATGTTTCAACTCCCAGTTATGATGTGGGAAACCGGTGTGGTTGA 2094 0.4331 MSREQQKRGKQEICSDGAEKVIVAVKASKEIPKTALVWSLTHVVQPGDCITLLVVVPPQSSGRRLWGFPRFSGDCASGHKKSSSGSSSSEQKSDITDSCSQMILQLHDVYDPNKINVKIKIVSGSPCGAVAAEAKKAEANWVVLDKQLKHEEKQCMEELQCNIVVMKRSQPKVLRLNLVGTKKKDLEELCSLPSEQDQMLGKQTKNKNDSLNSLKGPVVTPSSSPELGTPFTATEAGTSSVSSSDQGTSPFFISEMNSESKKEETIKENPELNDSISDTDSENLSNSSASLRFQPWITDLLLHQRSSHPKEERTGRSHNRIQLSTTRALLEKFSRLDREAEIEMSTYKTDLDFSGNVREAIALSRNTPPGPPPLCSICQHKAPVFGKPPRWFSYAELELATGGFSQTNFLAEGGFGSVHRGVLPDGQVVAVKQHKLASSQGDLEFCSEVEVLSCAQHRNVVMLIGFCIEDKRRLLVYEYICNGSLDSHLYGRQRKPLEWSARQKVAVGAARGLRYLHEECRVGCIIHRDMRPNNILITHDFEPLVGDFGLARWQPDGDTGVETRVIGTFGYLAPEYAQSGQITEKADVYSFGVVLVELVTGRKAVDLNRPKGQQCLTEWARPLLEEYAIEELIDPRLGSHYSEHEVYCMLHAASLCIRRDPYSRPRMSQVLRILDGDTVMDPNYVSTPSYDVGNRCG* 698
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lapu5g00223 697 ProSitePatterns Tyrosine protein kinases specific active-site signature. 525 537 IPR008266 GO:0004672|GO:0006468
Lapu5g00223 697 FunFam Adenine nucleotide alpha hydrolase-like domain kinase 376 479 - -
Lapu5g00223 697 MobiDBLite consensus disorder prediction 197 256 - -
Lapu5g00223 697 MobiDBLite consensus disorder prediction 257 274 - -
Lapu5g00223 697 Pfam Protein tyrosine and serine/threonine kinase 408 673 IPR001245 GO:0004672|GO:0006468
Lapu5g00223 697 Gene3D HUPs 5 168 IPR014729 -
Lapu5g00223 697 SUPERFAMILY Protein kinase-like (PK-like) 388 682 IPR011009 -
Lapu5g00223 697 PANTHER OS01G0750732 PROTEIN 155 681 - -
Lapu5g00223 697 ProSiteProfiles Protein kinase domain profile. 404 680 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lapu5g00223 697 Gene3D Transferase(Phosphotransferase) domain 1 480 684 - -
Lapu5g00223 697 FunFam Adenine nucleotide alpha hydrolase-like domain kinase 480 683 - -
Lapu5g00223 697 MobiDBLite consensus disorder prediction 197 285 - -
Lapu5g00223 697 CDD STKc_IRAK 410 676 - -
Lapu5g00223 697 FunFam Dual-specific kinase DSK1-like 12 167 - -
Lapu5g00223 697 Gene3D Phosphorylase Kinase; domain 1 376 479 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lapu5g00223 Lapu-Chr5 1836006 1847908 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lapu5g00223 384 680 Trihelix Transcription Factor Family AT1G70460 53.311 1.21e-102 327
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_PERK-2 Lapu5g00223 PK_Tyr_Ser-Thr 4.3e-41 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lapu5g00223 - - gmx:100789216 1299.26