Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lapu5g00218 ATGCAGGATCCAGCGTTATTCCAACCCTTGAAACCCCACTTTCCCGAACAAGAGCAACTTAAATGTCCGCGTTGCGATTCCGTCAACACCAAGTTCTGCTACTACAACAACTACAACCTCTCGCAGCCTCGCCATTTTTGCAAAAATTGCAGAAGGTATTGGACCAAAGGAGGTGCTTTGAGAAACATCCCTGTTGGGGGTGGAAGCAGAAAGAACGCTAAACGATCATCCTCATCCACCAACACCAAACGCGCTTCCCCGTCACCTGCTACAGAACCTGACCCGACTCGTATTTGCCCTAACCCAGTTGGTGATGGTGGGAGTTTCGGTTCCCTTTTGACATCGGGTGCTCATTTGGGGAACCTCTTGGACGGTCTGAATTCAAGTGGGGCGAATCTGAAAGCTGTGCGAATGGAAGAATTTGGGGAGAATGTTAGTTCGGGTCAAATGGCGGATCCGGGTTCTGGTCGGAACCCTGTGTTGGAGATTGAAAGAAATGGTAATGCAGAGAGTTTCCTGAGTATGCAGAATGGTGATTCAAACTGTTGGAATGGTACTAATGGGTGGTCTAACCTTGCAATTTTCACTCCTGGGTCTAGCTATGAAAATTTATGA 615 0.4797 MQDPALFQPLKPHFPEQEQLKCPRCDSVNTKFCYYNNYNLSQPRHFCKNCRRYWTKGGALRNIPVGGGSRKNAKRSSSSTNTKRASPSPATEPDPTRICPNPVGDGGSFGSLLTSGAHLGNLLDGLNSSGANLKAVRMEEFGENVSSGQMADPGSGRNPVLEIERNGNAESFLSMQNGDSNCWNGTNGWSNLAIFTPGSSYENL* 205
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lapu5g00218 204 PANTHER DOF ZINC FINGER PROTEIN DOF1.4-RELATED 17 115 IPR045174 GO:0003700|GO:0006355
Lapu5g00218 204 MobiDBLite consensus disorder prediction 61 103 - -
Lapu5g00218 204 Pfam Dof domain, zinc finger 18 74 IPR003851 GO:0003677|GO:0006355
Lapu5g00218 204 MobiDBLite consensus disorder prediction 71 89 - -
Lapu5g00218 204 ProSitePatterns Zinc finger Dof-type signature. 22 58 IPR003851 GO:0003677|GO:0006355
Lapu5g00218 204 ProSiteProfiles Zinc finger Dof-type profile. 20 74 IPR003851 GO:0003677|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lapu5g00218 Lapu-Chr5 1791752 1793273 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lapu5g00218 11 123 C2C2-Dof Transcription Factor Family AT1G51700 59.259 3.26e-47 152
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-Dof Lapu5g00218 zf-Dof 2e-33 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lapu5g00218 - - gmx:100798927 343.969
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lapu5g00218 5 1791752 1793273 Lapu5g00218 5 1791752 1793273 ECH
Lapu5g00218 5 1791752 1793273 Lapu10g00492 10 7283846 7285719 PCT