Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lapu5g00217 ATGACGACAGTGCCAGGACAATTGATTTGGGAGATCGTGAAGAAGAACAACTCTTTCTTGGTGAAAGAGTTCGGAAGGGGCACTCAAAGCGTACAGTTCAGCAGAGAGCCCAACAATCTCTACAACCTCAACACTTTCAAGTACTCTGGTTTGGCGAACAAGAAAACTGTCGCTATTCAGCCTGCTGGTAAAGACCAGGCTGTGATACTTGCCACAACTAAGACAAAGAAACAAAATAAGCCCGCTTCTTTGCTTCACACATCTGTCATGAAAAAGGAGTTCCGAAGAATGGCTAAGGCAGTGCAAAATCAGGTAGCAGATAACTACTACAGGCCTGATCTGAAAAAGGCAGCTCTGGCAAGGTTGAGCGCTGTGAATAGGAGCCTGAAAGTTGCAAAGTCTGGTGTGAAGAAGAGAAACAGACAGGCTGTGAAGGTCGCTGGCAGGAAGTGA 453 0.4636 MTTVPGQLIWEIVKKNNSFLVKEFGRGTQSVQFSREPNNLYNLNTFKYSGLANKKTVAIQPAGKDQAVILATTKTKKQNKPASLLHTSVMKKEFRRMAKAVQNQVADNYYRPDLKKAALARLSAVNRSLKVAKSGVKKRNRQAVKVAGRK* 151
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lapu5g00217 150 Pfam Ribosomal L28e protein family 8 128 IPR029004 -
Lapu5g00217 150 Gene3D - 6 133 - -
Lapu5g00217 150 FunFam 60S ribosomal protein L28 5 133 - -
Lapu5g00217 150 PANTHER 60S RIBOSOMAL PROTEIN L28 1 150 IPR002672 GO:0003735|GO:0005840|GO:0006412
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lapu5g00217 Lapu-Chr5 1786599 1789013 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lapu5g00217 1 143 Cytoplasmic Ribosomal Protein Gene Family AT4G29410 72.028 8.55e-75 218
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lapu5g00217 K02903 - gmx:100500189 276.559
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lapu10g00500 10 7370744 7373748 Lapu5g00217 5 1786599 1789013 ECH
Lapu5g00217 5 1786599 1789013 Lapu5g00217 5 1786599 1789013 ECH
Lapu5g00217 5 1786599 1789013 Lapu10g00500 10 7370744 7373748 PCT