Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lapu5g00212 ATGGACGGTCTAAGTTGGGATTCCTCATCACAACTTGTTGGTAACATACCGATCTTGTGGAGCAGTCAGCCTCAAGACCTTGAAGGAGAGTATCATCATTCCATGCCACACCTTTGTTCAAGTATTCTCAATCAAACAGGTTATCCACATCCCAGTTCTGAAAAAGCGAGGGATATGGTTCATCCATCATCCACTTCTGAGATAATGAGTATTTTGTCAAATACGAATCTGTCACAAAGAACAGCAACCATGCCTGTGAAATCAGGAGCAGCTGGAGCCGGTTGGGAAGAAGCTTTAACATCCCAATCATGCCCGTCCCTTTCGGTGAATGTGAACCAAACTAGCAATTTTGTAGCAGATTTCAACATGGCCCAGCAACAGCACCTTATCAACGGCACACAAAACGGCAAGGCTACCTGCTCTCTCGAGTCACTTGATTGCTTGCTTTCAGCTACTAAGAATGGCAACACAGACACGTCTCTCGAAGATGATGGGATTTCCATGATGATTTTATCTGACTGCAGAGACTTATGTAACTTCAGTTATGGCAGTACAGTTTCCTCTGGTGAATCTGAGAGCAATGCTTCCAATGCTAGAAACAGTGACATGCGGTATCCATCAGTGAATGAGCTAGATGAAACAGTGTCTCAAAGCTTCTCTGATCAATATCTAAGTCAAGGAAGAGTAATAGGTTCTGAAGTTATTTGCACAAAAGGGAGCAATTCACGCTTTAGCGTTGCTCAGAATTCTTCTGCCACTGAAGGTGGTTTCAGGCTTATCTCAGAGACTCCACCAAAGTCCAAGAGACCCAGATGGGATAAACATCCTGGTTCATCAAATATCAACTTCCAGCAGCCAAATTCATCTGTGTCACCTTCCTTTGAAGAACCTGATCCAGAGGCCATAGCACAAATGAAGGAAATGATATACAGGGCTGCAGCTTTTAGGCCAGTGAACTTGGGCTTGGAAGTGGTGGAAAAGCCTAAAAGGAAGAATGTCAGGATATCAACTGATCCACAGACTGTGGCTGCCAGGGAAAGAAGGGAGAGAATAAGTGAGAGGATTAGGGTTTTGCAGAAGATTGTGCCTGGTGGAAGCAAGATGGACACTGCATCAATGCTTGATGAAGCTGCAAACTACCTCAAGTTTCTGAGATCACAAGTGAAAGCACTAGAAAATTTAGGTAACAAGCTTGACACAATGAATTGTCCTCCTAACATAGCCTTCTCGTTCAACCCTTCTTTTCCCATACAAACACATTTCCCCGTCCAAAGCCCTAGCGACCACACCCACATCCAACATTCCAAGGGTTGGAAATGA 1320 0.4424 MDGLSWDSSSQLVGNIPILWSSQPQDLEGEYHHSMPHLCSSILNQTGYPHPSSEKARDMVHPSSTSEIMSILSNTNLSQRTATMPVKSGAAGAGWEEALTSQSCPSLSVNVNQTSNFVADFNMAQQQHLINGTQNGKATCSLESLDCLLSATKNGNTDTSLEDDGISMMILSDCRDLCNFSYGSTVSSGESESNASNARNSDMRYPSVNELDETVSQSFSDQYLSQGRVIGSEVICTKGSNSRFSVAQNSSATEGGFRLISETPPKSKRPRWDKHPGSSNINFQQPNSSVSPSFEEPDPEAIAQMKEMIYRAAAFRPVNLGLEVVEKPKRKNVRISTDPQTVAARERRERISERIRVLQKIVPGGSKMDTASMLDEAANYLKFLRSQVKALENLGNKLDTMNCPPNIAFSFNPSFPIQTHFPVQSPSDHTHIQHSKGWK* 440
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lapu5g00212 439 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 335 384 IPR011598 GO:0046983
Lapu5g00212 439 PANTHER TRANSCRIPTION FACTOR HEC3-RELATED 156 432 IPR045843 GO:0003700|GO:0006355
Lapu5g00212 439 Gene3D - 340 403 IPR036638 GO:0046983
Lapu5g00212 439 MobiDBLite consensus disorder prediction 277 294 - -
Lapu5g00212 439 SMART finulus 341 390 IPR011598 GO:0046983
Lapu5g00212 439 MobiDBLite consensus disorder prediction 255 296 - -
Lapu5g00212 439 Pfam Helix-loop-helix DNA-binding domain 345 384 IPR011598 GO:0046983
Lapu5g00212 439 Coils Coil 374 394 - -
Lapu5g00212 439 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 340 399 IPR036638 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lapu5g00212 Lapu-Chr5 1753053 1754801 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lapu5g00212 94 431 Basic Helix-Loop-Helix Transcription Factor Gene Family AT3G21330 48.159 1.38e-82 257
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Lapu5g00212 HLH 3.1e-05 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lapu5g00212 - - gmx:100793830 679.478
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lapu5g00212 5 1753053 1754801 Lapu5g00212 5 1753053 1754801 ECH
Lapu5g00212 5 1753053 1754801 Lapu10g00507 10 7424927 7427081 PCT