Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lapu5g00199 ATGGGCAAAGCTACCAGATGGTTAAAGGGGTTATTGGGAATGAAGAAAGAGAGAGACTGTTGTGGCCATTCGAACTCACTGGCTCTTGACAAGAGGGAAAAGAAACAATCAGAGAAGGATGAAGAGAGTCACATTACACCATCGGCCATTGATCGGAATAGGTACAAATTCTATGTCGCCAAAAAAGAGGGTGTTAAAAACAAACAGGCCACTGATGTGACAGTTGTGAGGTCAAGAAGGGGTGACAGAGACACCTTGCTAATTGGAAGCAGGGAGGGCTGTGCTGCTGTGTCAATTCAATCCTTCTTCAGAGGCTATTTGGCGCGAAGAGCTCTTAGAGCACTCAAAGGATTGGTTAAGATACAGGCTCTTGTTAGAGGGTATCTAGTTCGAAAAAGGGTTGCTGCAACTCTCCACAGTGTTCAAGCAATGATAAGAGCTCAAGCTGTTGCTCGATCAGAGCGAGCTCGACGTTCCATGGACAAGGAAAATAGATTTCATCCAGAATCTCCTTCCAGAAAATATGTGCAACAACGGTTTGATGAAACAAGAATTTATCAATCACACAATAGAAGAGCACCCATGTACTCTAAGGCGGCACCCTTGAATGGATTTGATGAGAGGTCAAAAGTTGTTGAGGTTGACACTCACATGGGCCATTCAAGATGCAGGAGCATTAACAGTGCAATGTCTGAATGTGGAGAAGAGCTGCAGTATCAAGCAATGTCATCCTCTCTTCCTTGTCCTGTTCAAGGTCGAATCTCACTTCATCAAAGCCAGCACCCTCAAGAGTTTGAATGGTTTTTCAATCTTGATGAAGGTAAAAAATTCTCCACAGCACACAACACACCTCGTCTACCGAGATGTATGATACCAGCTACTCCACTGAAGAGTGTTTGTGGGGACACCTTAAGGCCTTGCTCCAATTTCCCTAACTACATGGCCAATACTCACTCTTCTAAGGCCAAACTAAGGTCTCACAGTGCTCCAAAGCAAAGACCTGAACTCCAAAAAAGGCTTTCAATCAATGAAATCATGGCAGCCAGAAATAGTGTCAGTGGTGCTGGAATGCAGTGGTCATCCAACCCAAAAGCTCAAGATTACTATTTCTTTGACAAGGTTATTTAG 1128 0.4406 MGKATRWLKGLLGMKKERDCCGHSNSLALDKREKKQSEKDEESHITPSAIDRNRYKFYVAKKEGVKNKQATDVTVVRSRRGDRDTLLIGSREGCAAVSIQSFFRGYLARRALRALKGLVKIQALVRGYLVRKRVAATLHSVQAMIRAQAVARSERARRSMDKENRFHPESPSRKYVQQRFDETRIYQSHNRRAPMYSKAAPLNGFDERSKVVEVDTHMGHSRCRSINSAMSECGEELQYQAMSSSLPCPVQGRISLHQSQHPQEFEWFFNLDEGKKFSTAHNTPRLPRCMIPATPLKSVCGDTLRPCSNFPNYMANTHSSKAKLRSHSAPKQRPELQKRLSINEIMAARNSVSGAGMQWSSNPKAQDYYFFDKVI* 376
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lapu5g00199 375 SMART iq_5 114 135 IPR000048 GO:0005515
Lapu5g00199 375 SMART iq_5 91 113 IPR000048 GO:0005515
Lapu5g00199 375 Pfam IQ calmodulin-binding motif 95 113 IPR000048 GO:0005515
Lapu5g00199 375 Pfam IQ calmodulin-binding motif 119 133 IPR000048 GO:0005515
Lapu5g00199 375 Pfam Protein of unknown function (DUF4005) 274 353 IPR025064 -
Lapu5g00199 375 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 93 135 IPR027417 -
Lapu5g00199 375 PANTHER IQ-DOMAIN 5-RELATED 1 351 - -
Lapu5g00199 375 MobiDBLite consensus disorder prediction 25 45 - -
Lapu5g00199 375 ProSiteProfiles IQ motif profile. 95 120 IPR000048 GO:0005515
Lapu5g00199 375 MobiDBLite consensus disorder prediction 155 174 - -
Lapu5g00199 375 Gene3D - 33 117 - -
Lapu5g00199 375 Gene3D - 118 166 - -
Lapu5g00199 375 ProSiteProfiles IQ motif profile. 116 143 IPR000048 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lapu5g00199 Lapu-Chr5 1633657 1635143 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lapu5g00199 1 357 IQD Protein Family AT3G16490 39.637 6.08e-68 217
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lapu5g00199 - - gmx:100797296 550.051
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lapu5g00199 5 1633657 1635143 Lapu5g00199 5 1633657 1635143 ECH
Lapu5g00199 5 1633657 1635143 Lapu10g00524 10 7557626 7560370 PCT