Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lapu5g00198 ATGGATGAAAGATCAAGAAACGAGGTATCTCCTCAGCTCTTAGATTTGATCCCAAACGAGAGAGAGTGGCAGATGAACAGAAACGGAGGAAAGTCCTCAGAGGAGCGGAAGCTTGAACTGAGGCTAGGTCCACCTGGTGAGGAGTGGTCTCTCGGTGGCAAAGTGAAGAACGCCAACACAGAAAGAGAAGAGTCTCTTCTTTCTCTTGGTTGCTTCCCTTCGAACATGTCTCATGCAATACTCAGTCCTAACAATGGGTTCAAAAGCAAGGCCTCTCCATGGCCAAACTACCACCACCAGGGTAACAACAAAGCCTCTTCACCGTTTCTTCAGTTCCCATCAGCCCCACCTGTGATGGGAAAAGATGCTTCACAAAAGTGTTGCCCTAAGGTGGTAGAGTTGCAGAATGGTTGTGGTGGTGGTGATAGCAAAGTGTTCTCTCCCTCTTCTGCAAATACAGCTGTGTCCCAGCCCAACACCTCTCAGAAAAGAACTGCTCCCGCTCCAGTGGTGGGATGGCCTCCAATTCGTTCCTTCAGGAAGAACCTTGCAAGCAGCAGCGCTTCTAAGCCACCAACTGAGTCACAGCCTGAGCAGCATAACAAGGTTGCTGGTAAAAAACCTGTTGATAACTATGGTAGTAAAGGTTTGTTTGTTAAGATCAACATGGATGGAGTTCCAATAGGGAGAAAAGTGGACCTCAATGCCTATGACAACTATGAAAATCTCTCTTCTGCTGTGGACGAGCTTTTCAGAGGTCTTCTTGCTGCTCAAAGGGATTCCTCTGCTGGTGGAGTTCTCAACAAGCAGGATGAAGAGAAAGCAATCACGGGCTTATTGGATGGAAGTGGAGAGTATACTCTTGTTTATGAGGATAATGAAGGAGACAGGATGCTTGTTGGGGATGTGCCATGGCACATGTTTGTATCAACAGTGAAGAGGCTACGAGTGTTGAAGAGTTCTGAGCTTTCTGCGTTTACCCTTGGCAGTAAGCAGGAGAAGTTATCGCTTGACTCGGCTATGACATGA 1029 0.4742 MDERSRNEVSPQLLDLIPNEREWQMNRNGGKSSEERKLELRLGPPGEEWSLGGKVKNANTEREESLLSLGCFPSNMSHAILSPNNGFKSKASPWPNYHHQGNNKASSPFLQFPSAPPVMGKDASQKCCPKVVELQNGCGGGDSKVFSPSSANTAVSQPNTSQKRTAPAPVVGWPPIRSFRKNLASSSASKPPTESQPEQHNKVAGKKPVDNYGSKGLFVKINMDGVPIGRKVDLNAYDNYENLSSAVDELFRGLLAAQRDSSAGGVLNKQDEEKAITGLLDGSGEYTLVYEDNEGDRMLVGDVPWHMFVSTVKRLRVLKSSELSAFTLGSKQEKLSLDSAMT* 343
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lapu5g00198 342 Pfam AUX/IAA family 38 325 IPR033389 -
Lapu5g00198 342 MobiDBLite consensus disorder prediction 180 199 - -
Lapu5g00198 342 MobiDBLite consensus disorder prediction 27 43 - -
Lapu5g00198 342 MobiDBLite consensus disorder prediction 1 54 - -
Lapu5g00198 342 Gene3D - 211 331 - -
Lapu5g00198 342 MobiDBLite consensus disorder prediction 148 166 - -
Lapu5g00198 342 FunFam Auxin-responsive protein 211 332 - -
Lapu5g00198 342 ProSiteProfiles PB1 domain profile. 216 320 IPR000270 GO:0005515
Lapu5g00198 342 PANTHER AUXIN-RESPONSIVE PROTEIN IAA17 35 323 IPR003311 GO:0005634|GO:0006355
Lapu5g00198 342 MobiDBLite consensus disorder prediction 148 209 - -
Lapu5g00198 342 SUPERFAMILY CAD & PB1 domains 210 317 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lapu5g00198 Lapu-Chr5 1611832 1616082 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lapu5g00198 219 335 B3 DNA Binding Superfamily AT4G23980 33.333 7.11e-14 70.9
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR AUX or IAA Lapu5g00198 AUX_IAA 1.2e-71 CL0072
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lapu5g00198 K14484 - gmx:100804593 533.872
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lapu10g00527 10 7589046 7592663 Lapu5g00198 5 1611832 1616082 ECH
Lapu5g00198 5 1611832 1616082 Lapu5g00198 5 1611832 1616082 ECH
Lapu5g00198 5 1611832 1616082 Lapu10g00527 10 7589046 7592663 PCT