Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lapu5g00196 ATGAATATTTCAATAAAACCCCGTTTGAGGTTGCTACTACTATTACATACAATTCTGCTTCGTCTTTGTTGCGCAAGTTCTTATCCCACGCCAACAAACTGCACCGACACAAGCCGCGTTTGTACTTCTTTCTTGGCCTTCAAGCCTAAACCAAACCAAACCTTGGCTGTGATACAAAGCCTGTTTGACGTGTTGCCCGGTGAGATCACTGTCGAAGGCAATGGCTGGGACTATTTATTCATCAGGAAAAACTGTTCGTGTGATGCTGGTATGAAGAAGTATGTGTCTAACACCACACTCACAGTGAAATCCAATGGAGGGTTTGTGCATGATTTGGTGAAGGAAGCCTATGATGGGCTTGCTCTCTTGCCCAACATCACACATTGGGCAAGGAAAGGTCATGGTGTCTTGTCACTGAACTTGTTCTGTAGCTGCTCCAGTGGACTGTGGAACTATTTGATGAGCTATGTCATCAGAGATGGGGATAGTGTTGAATCACTAGCAAGCCGGTTTGGGGTTAGTATGGATAGCATTGAGACAGTGAATGGCATTGACAATCCTGGTAGCTCCACTGTTGGTTCTCTCTACTATATACCTTTGAATTCGGTTCCTGGTGAGCTTTATCACTTGAAGAATGATACTCCTCCAGTTCCAGCCCCTTCCCCATCTGTAGATGAATTTTCAGCTGACCAAATCGACCAGAAGGCTCGTGTACCCCATGAACGGATCGTAGAAGGTTTTGGGGTTGGTCTTGCTCTGATAATATTAAGCATTATTGTCTGTGTGTTCCTGAGATCACCCAATTGTTTGGTTGAAGCCAGAAATAACGCAAAAAATTCTGCTGGAAAGATCTCTAATAAGTTCAATGTTTTTGGCAATACAAATGTGTTTTGTGGATGTGGCAAACCTGTGGACCAGAAGCAAACTGATGGTGAATCCAGTAGTCAGCAAATTATCGTTACCAAAGCATCGTCAGCTCTAATACCTGACATGCTGGACATGGATAAGCCTGTAGTTTTTTCATATGAAGAGATTTTTGCCTCAACCGATGGTTTCTCTGATGCAAATCTACTCGGGCACAGAACATATGGTTCTGTTTACTATAGTCTCCTTCGTGACCAGGAAGTTGCTATTAAAAGAATTACAGCTACTAAAACTACAGAATTTATGTCAGAGATAAAAGTTCTGTGCAAGGTTCATCATGCTAATCTGGTAGAATTGATCGGCTATGCGGCTAGTCATGATGATTTTTTCCTTATTTACGAATATGCTCAGAAGGGCTCACTCAGCAGCCATTTGCATGATCCTCAAAATAAGGGTCATTCATCTCTTTCTTGGATCACAAGGGTCCAGATTGCACTTGATGCTGCTAGGGGCCTTGAATACATACATGAACATACAAAAACTCGCTACGTCCATCAAGATATCAAGACAAGCAACATTTTACTTGATGCTTCCTTTAGAGCCAAGATATCAGATTTTGGGTTAGCAAAACTAGTTGGTGAAAGAAATGAGAGAGAAACAACAGCAACCAAAGTTGTAAATGCATATGGATATCTTGCTCCAGAATACTTTAGCAATGGCCTTGCAACGACCAAAAGTGATGTCTATGCATTTGGTGTGGTTCTTTTTGAGGTTATGTCAGGGAAGGAGGCCATCATTCAAACACAAGGTCCTGAAAAACGATCATTGGCATCTACTATGTTGGCAATTCTTAGGAACTCACCCGATTCCGTGAGCATGTCAAGCACAAGAAACCTCGTCGATCCTATAATGATGGATCTGTATCCCCATGATTGTGTATACAAGATGGCCGTGCTGGCAAAGCAATGTGTGGAAGAGGATCCCGTATTACGCCCTGACATGAAGCAAGTTGTGATTTGCCTCTCACAAATCCTGCTGTCTTCGGTTGAGTGGGAAGCTACTCTTGCCGGGAACAGCCAGGTATTCAGTGGCCTTGTTCAGGGAAGATAG 1974 0.4296 MNISIKPRLRLLLLLHTILLRLCCASSYPTPTNCTDTSRVCTSFLAFKPKPNQTLAVIQSLFDVLPGEITVEGNGWDYLFIRKNCSCDAGMKKYVSNTTLTVKSNGGFVHDLVKEAYDGLALLPNITHWARKGHGVLSLNLFCSCSSGLWNYLMSYVIRDGDSVESLASRFGVSMDSIETVNGIDNPGSSTVGSLYYIPLNSVPGELYHLKNDTPPVPAPSPSVDEFSADQIDQKARVPHERIVEGFGVGLALIILSIIVCVFLRSPNCLVEARNNAKNSAGKISNKFNVFGNTNVFCGCGKPVDQKQTDGESSSQQIIVTKASSALIPDMLDMDKPVVFSYEEIFASTDGFSDANLLGHRTYGSVYYSLLRDQEVAIKRITATKTTEFMSEIKVLCKVHHANLVELIGYAASHDDFFLIYEYAQKGSLSSHLHDPQNKGHSSLSWITRVQIALDAARGLEYIHEHTKTRYVHQDIKTSNILLDASFRAKISDFGLAKLVGERNERETTATKVVNAYGYLAPEYFSNGLATTKSDVYAFGVVLFEVMSGKEAIIQTQGPEKRSLASTMLAILRNSPDSVSMSSTRNLVDPIMMDLYPHDCVYKMAVLAKQCVEEDPVLRPDMKQVVICLSQILLSSVEWEATLAGNSQVFSGLVQGR* 658
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lapu5g00196 657 FunFam PTI1-like tyrosine-protein kinase 3 424 643 - -
Lapu5g00196 657 Pfam Protein tyrosine and serine/threonine kinase 357 628 IPR001245 GO:0004672|GO:0006468
Lapu5g00196 657 Gene3D LysM domain 151 205 IPR036779 -
Lapu5g00196 657 PANTHER CHITIN ELICITOR RECEPTOR KINASE 1-RELATED 77 651 IPR044812 GO:0019199|GO:0045087
Lapu5g00196 657 SUPERFAMILY Protein kinase-like (PK-like) 330 629 IPR011009 -
Lapu5g00196 657 Pfam LysM domain 156 188 IPR018392 -
Lapu5g00196 657 ProSiteProfiles Protein kinase domain profile. 352 634 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lapu5g00196 657 SUPERFAMILY LysM domain 154 199 IPR036779 -
Lapu5g00196 657 ProSiteProfiles LysM domain profile. 154 198 IPR018392 -
Lapu5g00196 657 ProSitePatterns Serine/Threonine protein kinases active-site signature. 471 483 IPR008271 GO:0004672|GO:0006468
Lapu5g00196 657 Gene3D Phosphorylase Kinase; domain 1 327 423 - -
Lapu5g00196 657 SMART serkin_6 352 632 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lapu5g00196 657 Gene3D Transferase(Phosphotransferase) domain 1 425 644 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lapu5g00196 Lapu-Chr5 1586592 1591683 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lapu5g00196 31 657 Receptor kinase-like Gene Family AT1G51940 60.681 0.0 719
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LysM Lapu5g00196 PK_Tyr_Ser-Thr 9.2e-47 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lapu5g00196 - - vra:106762524 1146.34