Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lapu5g00192 ATGACTCGGCGGTGCTCCCACTGCAGCAACAACGGCCACAACTCCCGGACGTGCCCCTCGTCGCGGGGGGCGGGCGCCGGCGTCAAGCTGTTCGGGGTCAGGCTGACGGATGGATCAATCATAAAGAAGAGCGCCAGCATGGGAAACCTTAACCTCGCCTCCGCACACCACCATTCTTCTCCTTCTTCTTCCAACCTCGCCGCCTCCTCCCCTAATCCCAGCTCTCCCTGCTCCGACCCGCCCCACGAGCCCCACGGTTACTTGTCCGACGACCCCGCCCATGTCTCCACCTTCGCTAACCGCCGCGGAGAAAGAAAAAAAGGTGTTGCATGGACTGAAGAAGAACATAGGCTGTTCTTAATTGGTCTCCAGAAGCTGGGCAAAGGAGACTGGCGTGGGATAGCACGTAATTTTGTTGTATCAAGGACCCCTACTCAAGTAGCAAGTCATGCCCAGAAGTATTTTATCCGGCAAAGTCATGCAACCAGGAGAAAGAGACGTTCCAGCCTTTTTGACATGGTTCCAGATATGGTTGGTCTTACTTCAGATCCACCTTCAGTTCCAGAAGAACAAGTGCTGCTTCCTCCTTCTGAGAACTCGCAACCTTGTAATGGAAAATCACAGCCTTCATTAAATCTCTCACTCAAATCAGAATTTGAACCCATGGAAACTACTTCTCAAGAAAACGTGGAACAGACCAATGAAACTATGGTGGGGTTAAACGGAATGACATCAATGGCTGCTCATGGATTCTTCCCCACTTATTTACCTGTTCCATTTCCCATATGGCCATCAACTGCAGCTCCCTTTGAAGAAGTTAAGGGAGGAGAGATATCCCATCATCAGGTCCACAAGCCAATCCCAGTCATTCCCAAGGAACCTGTCAATGTTGACGAACTTGTGGGACTGTCTCATCTCAGCATTGGGGAAACACAGGTACGTGATAGAGAGCCTTCCCCACTTTCCTTAAAGTTGTTAGGGGAACCCTCAAGGCAGTCAGCATTCCATGCAAATGCTCCAGTTGGTGGTTCGGATTTAAAAACTGGCAAGAACAGTGCAATTCAAGCGGTTTGA 1074 0.5056 MTRRCSHCSNNGHNSRTCPSSRGAGAGVKLFGVRLTDGSIIKKSASMGNLNLASAHHHSSPSSSNLAASSPNPSSPCSDPPHEPHGYLSDDPAHVSTFANRRGERKKGVAWTEEEHRLFLIGLQKLGKGDWRGIARNFVVSRTPTQVASHAQKYFIRQSHATRRKRRSSLFDMVPDMVGLTSDPPSVPEEQVLLPPSENSQPCNGKSQPSLNLSLKSEFEPMETTSQENVEQTNETMVGLNGMTSMAAHGFFPTYLPVPFPIWPSTAAPFEEVKGGEISHHQVHKPIPVIPKEPVNVDELVGLSHLSIGETQVRDREPSPLSLKLLGEPSRQSAFHANAPVGGSDLKTGKNSAIQAV* 358
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lapu5g00192 357 ProSiteProfiles SANT domain profile. 111 159 IPR017884 -
Lapu5g00192 357 PANTHER TRANSCRIPTION FACTOR KUA1 3 261 - -
Lapu5g00192 357 FunFam transcription factor MYB1R1 109 160 - -
Lapu5g00192 357 MobiDBLite consensus disorder prediction 334 357 - -
Lapu5g00192 357 SMART sant 107 157 IPR001005 -
Lapu5g00192 357 MobiDBLite consensus disorder prediction 53 94 - -
Lapu5g00192 357 CDD SANT 110 155 IPR001005 -
Lapu5g00192 357 ProSiteProfiles Myb-like domain profile. 103 155 IPR001005 -
Lapu5g00192 357 Gene3D - 109 160 - -
Lapu5g00192 357 NCBIfam myb-like DNA-binding domain, SHAQKYF class 106 158 IPR006447 GO:0003677
Lapu5g00192 357 Pfam Myb-like DNA-binding domain 110 155 IPR001005 -
Lapu5g00192 357 MobiDBLite consensus disorder prediction 1 21 - -
Lapu5g00192 357 SUPERFAMILY Homeodomain-like 105 159 IPR009057 -
Lapu5g00192 357 MobiDBLite consensus disorder prediction 193 210 - -
Lapu5g00192 357 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 103 159 IPR017930 -
Lapu5g00192 357 MobiDBLite consensus disorder prediction 53 73 - -
Lapu5g00192 357 MobiDBLite consensus disorder prediction 1 23 - -
Lapu5g00192 357 MobiDBLite consensus disorder prediction 176 210 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lapu5g00192 Lapu-Chr5 1549773 1554518 Dispersed/Transposed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB-related Lapu5g00192 Myb_DNA-binding 9.3e-11 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lapu5g00192 - - gmx:778036 584.334
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lapu5g00192 5 1549773 1554518 Lapu5g00192 5 1549773 1554518 ECH