Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lapu5g00191 ATGTTCTCATCAACCAGATGCGCCTTCCTGAGCAACTCAGGGTTAGGTGGGTGTGGCAGCGCGTGTGATGCGCGGAGAAAGCGTTCAAGCCCTATGAGGGTGGTGTGCATGACCCCAAGTAGCAGCAGGTCGGGTGATAGAAACAACAGCGTTGTGATGGAGACGCCGTTGAAAGAATTGAAAAAGGATTCCGCGGTGGCTGACGTTGATGACAACTCCGTCTCCTCCGGTGGTCCTCAAGACGTGTACGGCGAGGATAGGGCGACGGAAGACCAGTTTGTTACCCCTTGGAGTGTTTCCGTTGCTAGTGGTTATACGTTGTTGCGAGATCCCCACTTCAACAAAGGGCTTGCCTTCAGTGAAAAAGAGAGGGATGCCCACTACTTGCGTGGTCTTCTTCCCCCATCTGTTATTCCCCAAGAAACTCAGGTAAAGAAAATGATCCAGCACGTACGCCAGTATCAAGTTCCATTGCAGAAGTACATGGCAATGATGGATCTTCAGGAGAGAAACGAACGGCTATTTTACAAACTTCTTATTGATCACGTTGAAGAGTTGCTCCCTGTTGTTTATACTCCAACTGTAGGTGAAGCTTGCCAGAAATATGGGAGCATCTTTATGCGTCCTCAGGGTCTTTATATAAGTTTGAAAGAGAAGGGGAAGATCCGTGAAGTACTAAGGAATTGGCCTGAGAAGAACATTCAAGTCATAGTTGTAACTGATGGAGAACGGATCCTGGGTCTTGGTGATCTTGGCTGTCAGGGGATGGGAATACCGGTGGGGAAACTTTCTTTATATACAGCACTTGGAGGAGTTCGCCCATCAGCTTGTTTGCCTATTACCATTGATGTGGGTACAAACAATGAGAAGCTGCTGAATGATGAATTATACATTGGGCTAAAGCAAAGACGTGCAACTGGGCAGGAGTATGCTGAGCTTATGCACGAATTTATGACAGCACTTAAGCAAACTTATGGGGAAAAGGTCCTAATTCAGTTTGAAGACTTTGCAAACCACAATGCTTTTGATCTGCTTGAGAAATATAGATCAACACATCTGGTCTTTAATGATGATATTCAGGGAACGGCATCTGTCGTCCTTGCTGGATTAGTTGCAGCTCTGAAATTGGTTGGTGGTAATTTAGCTGATCACAGATTCTTGTTCCTTGGTGCTGGAGAGGCTGGCACTGGAATAGCAGAACTAATAGCACTTGAAACATCAAAACAGACAAATGCCCCATTGGAGGAAGTGCGCAAGAATATTTGGTTGGTGGACTCAAAGGGATTGATTGTTAGCTCCCGCAAAGACTCACTCCAACATTTCAAGAAGCCCTGGGCTCATGAGCATGAACCTGTTAAAAATCTTTTAGATGCTGTTAATCAAATTAAGCCAACAGTGTTGATTGGAACATCGGGACAAGGAAGAACTTTTACCAAAGAGGTGATTGAGGCTATGTCCTCTATCAACGAGAAACCAATTATTCTTTCTCTTTCCAACCCTACGTCACAGTCAGAATGTACTGCTGAAGAAGCTTACAAGTGGAGTCAGGGACGTGCCATTTTTGCAAGTGGGAGTCCTTTCCCCCCGGTTGAGTATGAGGGGAAACTGTTTGTGCCTGGCCAGGCCAACAATGCATACATATTTCCTGGATTCGGTCTCGGTTTGATAATGTCTGGGACCATTCGAGTGCATGATGACCTGCTTCTGGCTGCCTCTGAGGCTTTGGCTTCACAAGTGAGCCAAGAGAACTTTGACAAGGGACTCATATACCCACCATTCACCAACATCAGAAAGATTTCAGCACACATAGCTGCCAATGTTGCTGCTAAGGCTTATGAACTTGGTTTGGCTACTCGGCTTCCTCAACCAAAAGATTTGGTGAAGTTTGCAGAGAGCTGTATGTACACCCCTTCCTACAGAACCTACCGGTGA 1932 0.4607 MFSSTRCAFLSNSGLGGCGSACDARRKRSSPMRVVCMTPSSSRSGDRNNSVVMETPLKELKKDSAVADVDDNSVSSGGPQDVYGEDRATEDQFVTPWSVSVASGYTLLRDPHFNKGLAFSEKERDAHYLRGLLPPSVIPQETQVKKMIQHVRQYQVPLQKYMAMMDLQERNERLFYKLLIDHVEELLPVVYTPTVGEACQKYGSIFMRPQGLYISLKEKGKIREVLRNWPEKNIQVIVVTDGERILGLGDLGCQGMGIPVGKLSLYTALGGVRPSACLPITIDVGTNNEKLLNDELYIGLKQRRATGQEYAELMHEFMTALKQTYGEKVLIQFEDFANHNAFDLLEKYRSTHLVFNDDIQGTASVVLAGLVAALKLVGGNLADHRFLFLGAGEAGTGIAELIALETSKQTNAPLEEVRKNIWLVDSKGLIVSSRKDSLQHFKKPWAHEHEPVKNLLDAVNQIKPTVLIGTSGQGRTFTKEVIEAMSSINEKPIILSLSNPTSQSECTAEEAYKWSQGRAIFASGSPFPPVEYEGKLFVPGQANNAYIFPGFGLGLIMSGTIRVHDDLLLAASEALASQVSQENFDKGLIYPPFTNIRKISAHIAANVAAKAYELGLATRLPQPKDLVKFAESCMYTPSYRTYR* 644
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lapu5g00191 643 SUPERFAMILY NAD(P)-binding Rossmann-fold domains 359 642 IPR036291 -
Lapu5g00191 643 PANTHER MALIC ENZYME-RELATED 73 641 - -
Lapu5g00191 643 Pfam Malic enzyme, NAD binding domain 359 611 IPR012302 GO:0051287
Lapu5g00191 643 ProSitePatterns Malic enzymes signature. 355 371 IPR015884 GO:0004471
Lapu5g00191 643 SMART Malic_M_2 359 612 IPR012302 GO:0051287
Lapu5g00191 643 SUPERFAMILY Aminoacid dehydrogenase-like, N-terminal domain 82 358 IPR046346 -
Lapu5g00191 643 PIRSF ME 60 643 IPR001891 GO:0004470|GO:0004471
Lapu5g00191 643 CDD NAD_bind_1_malic_enz 359 637 - -
Lapu5g00191 643 ProSiteProfiles Prokaryotic membrane lipoprotein lipid attachment site profile. 1 18 - -
Lapu5g00191 643 FunFam Malic enzyme 357 643 - -
Lapu5g00191 643 SMART malic_2 168 349 IPR012301 GO:0004471
Lapu5g00191 643 Pfam Malic enzyme, N-terminal domain 168 349 IPR012301 GO:0004471
Lapu5g00191 643 Gene3D - 357 643 - -
Lapu5g00191 643 Gene3D - 102 356 IPR037062 GO:0004471
Lapu5g00191 643 FunFam Malic enzyme 102 356 - -
Lapu5g00191 643 PRINTS Malic enzyme signature 270 292 IPR001891 GO:0004470|GO:0004471
Lapu5g00191 643 PRINTS Malic enzyme signature 386 402 IPR001891 GO:0004470|GO:0004471
Lapu5g00191 643 PRINTS Malic enzyme signature 355 371 IPR001891 GO:0004470|GO:0004471
Lapu5g00191 643 PRINTS Malic enzyme signature 174 198 IPR001891 GO:0004470|GO:0004471
Lapu5g00191 643 PRINTS Malic enzyme signature 234 263 IPR001891 GO:0004470|GO:0004471
Lapu5g00191 643 PRINTS Malic enzyme signature 330 348 IPR001891 GO:0004470|GO:0004471
Lapu5g00191 643 PRINTS Malic enzyme signature 489 505 IPR001891 GO:0004470|GO:0004471
Lapu5g00191 643 MobiDBLite consensus disorder prediction 62 87 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lapu5g00191 Lapu-Chr5 1534158 1541337 Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lapu5g00191 K00029 - gmx:100791514 1189.48
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lapu10g00531 10 7619508 7635540 Lapu5g00191 5 1534158 1541337 ECH
Lapu9g01718 9 32013918 32018957 Lapu5g00191 5 1534158 1541337 ECH
Lapu5g00191 5 1534158 1541337 Lapu5g00191 5 1534158 1541337 ECH
Lapu5g00191 5 1534158 1541337 Lapu9g01718 9 32013918 32018957 ECH
Lapu5g00191 5 1534158 1541337 Lapu10g00531 10 7619508 7635540 PCT