Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lapu5g00180 ATGACTGATACACCGTGTCACGGAACTCCTAGCAGTAGCCCCAGCAACTCCTCCACTTCAAAGCCCCATAAAACAGAGACCCCAAAACAGAGCAAGACCCAAAAACATAGCAAGCCCAAGAGAAACAGAGACCCCACCAAGCATCCCGTCTACCACGGCGTGCGAATGCGCAATTGGGGCAAATGGGTATCCGAAATTCGCGAGCCACGCAAGAAATCACGTATCTGGCTCGGAACTTTTGCCACGCCTGAAATGGCGGCACGCGCGCACGATGTTGCAGCTCTGAGCATTAAAGGTCACACGGCGATTCTCAACTTCCCTAACATAGTAAACATGCTTCCCAGACCCGCCACGTGTGCCCCACGTGACATCCAAGTGGCCGCCGCGAAAGCCGCGGCGATGGTGGAGTTCGACCACGAGTGTTCAGATGAGGCAGAGTCATCGGAGCTTAGCGAGATTGTGGAACTGCCGAACATAGAAGAGAGCTCGGAATCAGTGGAGTGGAGAAGCGAGTTGGCTTTTACTGAGTCGGTGGATAGTTGGTTGTACCCTCCAATGGCAGTGGGAAGCATTTGTGACATGATGGTTGGTGAAGACGAGTGTGGATTCTTCCACTTTCACACTGATCATCAAAAACACATGTTCCATTTAGTTTAA 657 0.519 MTDTPCHGTPSSSPSNSSTSKPHKTETPKQSKTQKHSKPKRNRDPTKHPVYHGVRMRNWGKWVSEIREPRKKSRIWLGTFATPEMAARAHDVAALSIKGHTAILNFPNIVNMLPRPATCAPRDIQVAAAKAAAMVEFDHECSDEAESSELSEIVELPNIEESSESVEWRSELAFTESVDSWLYPPMAVGSICDMMVGEDECGFFHFHTDHQKHMFHLV* 219
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lapu5g00180 218 FunFam Ethylene-responsive transcription factor 2 49 108 - -
Lapu5g00180 218 SUPERFAMILY DNA-binding domain 50 107 IPR016177 GO:0003677
Lapu5g00180 218 CDD AP2 51 108 IPR001471 GO:0003700|GO:0006355
Lapu5g00180 218 PRINTS Ethylene responsive element binding protein signature 51 62 IPR001471 GO:0003700|GO:0006355
Lapu5g00180 218 PRINTS Ethylene responsive element binding protein signature 73 89 IPR001471 GO:0003700|GO:0006355
Lapu5g00180 218 PANTHER ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR ERF042-RELATED 29 166 - -
Lapu5g00180 218 SMART rav1_2 50 113 IPR001471 GO:0003700|GO:0006355
Lapu5g00180 218 ProSiteProfiles AP2/ERF domain profile. 50 107 IPR001471 GO:0003700|GO:0006355
Lapu5g00180 218 Gene3D AP2/ERF domain 50 109 IPR036955 GO:0003700|GO:0006355
Lapu5g00180 218 Pfam AP2 domain 49 100 IPR001471 GO:0003700|GO:0006355
Lapu5g00180 218 MobiDBLite consensus disorder prediction 1 51 - -
Lapu5g00180 218 MobiDBLite consensus disorder prediction 1 24 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lapu5g00180 Lapu-Chr5 1448204 1448860 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lapu5g00180 29 185 AP2-EREBP Transcription Factor Family AT5G11590 54.945 2.17e-57 180
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Lapu5g00180 AP2 8e-14 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lapu5g00180 K09286 - gmx:100784419 311.997