Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lapu5g00170 ATGTCTAGAGCATTAGAACATGATTACATAGGCTTGGCAGAGAAACCGTCTATAGACGGAGGCTCTGACAAACTATCTTCTTCTTCTTCTTCATCATCTTCTGTGGATGGTAAAACCTCATCACTCAACTTGAAGGAGACAGAACTGAGGCTTGGCCTACCTGGTTGCAAGTCGCCAGAGAGAAAATCTGGTGCTGGACTCTGTCTCTTTGGCAAAGAGTTGCAGAACAAGCATAATGTTTGTTCAGTTGCAAGCCCTTTGAAGGCTGGGGCTAAGAGGGGCTTCTCTGATGCTATTGACACTTCTTCTGGGAAAAGGGGTTCTTCTGTCACTGATGGATCTCAAGGAGCTGCTTTGTTCTCTCCTAGAGGGGGCATTGTTGGGAAGCCTCTTATTGGTTTAGACACTCAAAATAATACCCCGCATGCTAACACCTCCATCAAAGAGGTTGGTGCAGTTCCTCAATCTGTCAAACCGGTTCAGGAAAAGAATAATCAGGTTGCTGCAACAAATGGTCATGCCAGTGCTCCTGATGCAAAGGCACAAGTTGTGGGATGGCCCCCAATTCGATCTTTCCGAAAGAACACGATGGCATCTAATTTGACAAAAAACAATGATGAAGGCGAGGGAAAACCTGGTTTTGGTTGTCTCTATGTCAAAGTCAGTATGGATGGTGCTCCTTATCTTAGAAAGGTTGATCTGAAAACCTATAACAATTACATGGAACTTTCTTCAGCTCTTGAGAAGATGTTCAGCTGCTTCACCATTGGTCAATGCAATTCTCCTGGACTTCCTGGGAAAGATGGACTAAGTGAGAGCTCTTTGAGGGATCTTCTTCATGGATCTGAATATGTTCTTACATATGAAGATAAAGATGGAGACTGGATGCTTGTGGGTGATGTTCCTTGGGAGATGTTCACTGATTCATGTCGGAGACTAAGGATCATGAAAGGCTCTGAAGCAATTGGGCTAGTTGTGTTTAATGGGCACTGTGCAATACTCCACATCAAATATACCATCTTTTCATCATAA 1032 0.438 MSRALEHDYIGLAEKPSIDGGSDKLSSSSSSSSSVDGKTSSLNLKETELRLGLPGCKSPERKSGAGLCLFGKELQNKHNVCSVASPLKAGAKRGFSDAIDTSSGKRGSSVTDGSQGAALFSPRGGIVGKPLIGLDTQNNTPHANTSIKEVGAVPQSVKPVQEKNNQVAATNGHASAPDAKAQVVGWPPIRSFRKNTMASNLTKNNDEGEGKPGFGCLYVKVSMDGAPYLRKVDLKTYNNYMELSSALEKMFSCFTIGQCNSPGLPGKDGLSESSLRDLLHGSEYVLTYEDKDGDWMLVGDVPWEMFTDSCRRLRIMKGSEAIGLVVFNGHCAILHIKYTIFSS* 344
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lapu5g00170 343 ProSiteProfiles PB1 domain profile. 216 318 IPR000270 GO:0005515
Lapu5g00170 343 MobiDBLite consensus disorder prediction 101 116 - -
Lapu5g00170 343 Pfam AUX/IAA family 46 324 IPR033389 -
Lapu5g00170 343 PANTHER AUXIN-RESPONSIVE PROTEIN IAA17 42 323 IPR003311 GO:0005634|GO:0006355
Lapu5g00170 343 MobiDBLite consensus disorder prediction 21 41 - -
Lapu5g00170 343 SUPERFAMILY CAD & PB1 domains 216 317 - -
Lapu5g00170 343 Gene3D - 213 330 - -
Lapu5g00170 343 MobiDBLite consensus disorder prediction 1 41 - -
Lapu5g00170 343 MobiDBLite consensus disorder prediction 98 117 - -
Lapu5g00170 343 FunFam Auxin-responsive protein 211 328 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lapu5g00170 Lapu-Chr5 1388301 1391409 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lapu5g00170 218 321 B3 DNA Binding Superfamily AT1G19850 33.962 1.82e-07 51.2
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR AUX/IAA Lapu5g00170 AUX_IAA 2e-89 CL0072
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lapu5g00170 K14484 - gmx:100804423 547.74