Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lapu5g00163 ATGGGCGCTGACATGTCCAACAATCCACCTCCCACTTCTCACGCCAAAGACTTCTTTGCCTCCCCAGCTCTCTCTCTCAGCCTTGCTGGGATTTTTCGCCATGCTGGTGTGGCGGCGGAGGCCGAAGCTGCCACTTCTAACATGGAGGTGGAGGAGTGGGAAGACGGGAGTGGAGGAGGTGAAAGGCTAGAAGAGATTAGCAGCGAGAATTCAGGTCCCACGAGATCCAGATCAGAGGATGATTTTGAAGGAGAAGGTGAACACGAGGATGCTGATGCTGATGCTGACGGGGATAGGAAAAAGAAGAAGAGGAAGAAATATCACAGGCACACTGCTGATCAGATCAGAGAAATGGAAGCGCTTTTCAAAGAGTCACCACATCCTGATGAAAAGCAGAGGCAACAGCTGAGCAAGCAATTAGGCCTTGCCCCAAGGCAAGTCAAGTTTTGGTTTCAAAATCGTCGAACCCAAATCAAGGCAATACAAGAGCGTCATGAAAATTCTTTGTTGAAGTCAGAAATAGAGAAACTAAAGGAGAAAAATAAGACCTTAAGAGAGACAATAAACAAAGCTTGTTGCCCCAACTGTGGCGTGCCCACCACAAGCAGAGATGGTGCCATGCCAACAGAAGAACAACAACTACGTATTGAAAATGCCAAACTCAAAGCTGAGGTAGAGAAGCTCCGAGCAGCTTTAGGGAAATACGCACCTGGGTCAACGTCCCCCTCATGTTCTTCTGGCCAAGACCAAGAGAATAGAAGCTCTTTGGATTTTTACACTGGAATTTTCGGAATTGACAATTCAAGGATAATGGATATAGTGAACCAAGCAATGGAGGAACTGATTAAGATGGCTACCATCGGGGAACCATTATGGCTTCGTAGCTTTGAGACTGGTCGCGAAATACTTAACTACGACGAATATGTGAAGGAGTTTGCAGTTGAAAATTCAAGCAGTGGAAAGCCAAAGAGATCCATTGAAGCCTCGAGAGACACTGGAGTTGTTTTTGTGGATCTCCCTCGGCTTGTCCAAAGTTTTCTTGATGCGAATCAATGGAAAGAAATGTTTCCGTGTTTGATATCTAAGGCGGCAACTGTTGATGTTATATGCAATGGAGAAGGTCCTAACAGGAATGGTGCAGTGCAACTGATGTTTGCTGAGCTGCAAATGCTCACTCCAATGGTGCCCACAAGAGAAGTCTATTTTGTCCGTTTCTGCAAACAGTTGAGTGCTGAACAGTGGGCAATCGTCGACGTATCCATAGACAAAGTAGAAGACAACATTGACGCGTCCCTCGTGAAATGCAGAAAACGCCCTTCAGGTTGCATTATTGAGGACAAGTCCAATGGCCACTGCAAAGTAATATGGGTGGAGCACTTGGAATGCCAGAAGAGTGCAGTCCATTCCATGTATCGCACCATTGTGAACAGTGGCCTAGCCTTTGGAGCAAAGCATTGGATTACGACTCTGCAACTTCAATGTGAACGTCTAGTTTTTTTCATGGCAACTAATGTTCCCATGAAGGATTCAACCGGTGTTGCCACATTGGCTGGGAGGAAAAGCATTTTGAAGTTGGCACAGAGAATGACATGGAGTTTCTGCCATGCAATTGGCGCGTCAAGCTTCCACACATGGACTAAGGTTACAAGCAAAAACGGGGAAGACATAAGGATAAGTTCTAGAAAGAATTTGAACGATCCTGGTGAACCTCTTGGGTTGATATTGTGCGCTGTTTGTTCTGTATGGTTGCCAGTCTCACAAAATGTTCTGTTTGATTTCTTGAGGGATGAAACACGCCGAAATGAATGGGATATCATGTCAAGTGGTGGGGCAGTGCAATCCATTGCAAATTTATCCAAAGGACAAGACCGAGGCAATGCCGTAACCATCCAAACAATTAAATTGAAAGAAAACAGTGTGTGGATATTACAAGATAGCTGCACAAATCCTTACGAGTCAATGGTGGTATACGCTTCTGTGGACATTACTGGTATTCAGTCTGTGATGACAGGATGTGATTCAAGCAACCTTGCGATACTTCCTTCGGGATTCTCTATTATTCCTGATGGCCTCGAGTCAAGGCCATTGGTGATTACTTCAAGGCAGGAAGAAAAATATACCGAGGGAGGATCTTTGTTTACAATGGCATTCCAGATCCTGACTAATGCATCTCCCACAGCCAAGTTAACAGTGGAGTCCGTGGACTCCATCAACACTCTTGTATCTTGTACATTGAGAAATATCAGAACAAGCTTACAATGTGAAGAGGGTTAG 2274 0.4516 MGADMSNNPPPTSHAKDFFASPALSLSLAGIFRHAGVAAEAEAATSNMEVEEWEDGSGGGERLEEISSENSGPTRSRSEDDFEGEGEHEDADADADGDRKKKKRKKYHRHTADQIREMEALFKESPHPDEKQRQQLSKQLGLAPRQVKFWFQNRRTQIKAIQERHENSLLKSEIEKLKEKNKTLRETINKACCPNCGVPTTSRDGAMPTEEQQLRIENAKLKAEVEKLRAALGKYAPGSTSPSCSSGQDQENRSSLDFYTGIFGIDNSRIMDIVNQAMEELIKMATIGEPLWLRSFETGREILNYDEYVKEFAVENSSSGKPKRSIEASRDTGVVFVDLPRLVQSFLDANQWKEMFPCLISKAATVDVICNGEGPNRNGAVQLMFAELQMLTPMVPTREVYFVRFCKQLSAEQWAIVDVSIDKVEDNIDASLVKCRKRPSGCIIEDKSNGHCKVIWVEHLECQKSAVHSMYRTIVNSGLAFGAKHWITTLQLQCERLVFFMATNVPMKDSTGVATLAGRKSILKLAQRMTWSFCHAIGASSFHTWTKVTSKNGEDIRISSRKNLNDPGEPLGLILCAVCSVWLPVSQNVLFDFLRDETRRNEWDIMSSGGAVQSIANLSKGQDRGNAVTIQTIKLKENSVWILQDSCTNPYESMVVYASVDITGIQSVMTGCDSSNLAILPSGFSIIPDGLESRPLVITSRQEEKYTEGGSLFTMAFQILTNASPTAKLTVESVDSINTLVSCTLRNIRTSLQCEEG* 758
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lapu5g00163 757 ProSitePatterns 'Homeobox' domain signature. 136 159 IPR017970 GO:0000981|GO:0006355
Lapu5g00163 757 CDD homeodomain 108 159 IPR001356 GO:0003677
Lapu5g00163 757 SUPERFAMILY Bet v1-like 266 496 - -
Lapu5g00163 757 SMART HOX_1 103 165 IPR001356 GO:0003677
Lapu5g00163 757 SUPERFAMILY Bet v1-like 518 718 - -
Lapu5g00163 757 Gene3D - 90 174 - -
Lapu5g00163 757 ProSiteProfiles 'Homeobox' domain profile. 101 161 IPR001356 GO:0003677
Lapu5g00163 757 FunFam Homeobox-leucine zipper protein GLABRA 2 272 495 - -
Lapu5g00163 757 Pfam START domain 274 496 IPR002913 GO:0008289
Lapu5g00163 757 CDD START_ArGLABRA2_like 268 495 - -
Lapu5g00163 757 ProSiteProfiles START domain profile. 263 499 IPR002913 GO:0008289
Lapu5g00163 757 Coils Coil 211 231 - -
Lapu5g00163 757 SUPERFAMILY Homeodomain-like 93 162 IPR009057 -
Lapu5g00163 757 SMART START_1 272 496 IPR002913 GO:0008289
Lapu5g00163 757 Coils Coil 160 190 - -
Lapu5g00163 757 Gene3D - 316 493 IPR023393 -
Lapu5g00163 757 FunFam Homeobox-leucine zipper protein HDG1 88 177 - -
Lapu5g00163 757 Pfam Homeodomain 104 159 IPR001356 GO:0003677
Lapu5g00163 757 MobiDBLite consensus disorder prediction 39 114 - -
Lapu5g00163 757 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN MERISTEM L1 101 752 IPR042160 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lapu5g00163 Lapu-Chr5 1322633 1328262 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lapu5g00163 66 756 Homeobox Transcription Factor Family AT1G79840 65.954 0.0 930
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-HD-ZIP Lapu5g00163 START 3e-55 CL0209
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lapu5g00163 K09338 - gmx:100808292 1344.33