Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lapu5g00142 ATGAGCGTGGTTGGATTTGATTTTGGTAACGAAAGCTGCATTGTTGCTGTTGCAAGACAGAGGGGGATTGATGTGGTACTCAATGATGAGTCCAAACGAGAAACACCTGCAATTGTATGCTTTGGTGACAAACAACGGTTCCTTGGGACAGCTGGAGCTGCTTCTACTATGATGAATCCAAAGAATTCAATCTCACAGATAAAGAGATTAATTGGCAGACAATTTTCAGATCCGGAACTGCAGCGAGATCTGAAGACTTTCCCTTTTCTGGTCACTGAAGGGCCTGATGGTTATCCATTGATTCATGCAAGGTACTTGGGTGAAGGTAAAACATTTACGCCTACCCAAGTATTCGGAATGATGTTATCAAACCTTAAAGAAATAGCTGAGAAAAATCTGAGTGCTGCTGTTGTTGATTGTTGCATTGGAATTCCACTTTACTTCACTGATCTGCAGAGGAGGGCAGTCTTGGATGCTGCCACTATAGCAGGGTTGCACCCACTTCGGCTATTTCATGAAACAACAGCAACTGCATTGGCTTATGGAATATATAAGACTGATCTTCCTGAAAATGATCAGCTAAATGTTGCTTTTGTTGATGTTGGACATGCCAGCATGCAAGTGTGCATTGCAGGATTTAAAAAGGGCCAGCTGAAAGTTTTGTCCCAGTCATTTGATAGGTCCCTAGGTGGGAGGGACTTTGATGAGGTTCTGTTCAATCATTTTGCTGCAAAGTTTAAGGGGGAGTACAAGATTGATGTATTGCAAAATGCTAGGGCTTGTCTAAGATTGAGGGCTGCCTGTGAGAAGCTGAAGAAGGTGCTTAGTGCTAATCCAGAGGCACCTTTAAACATAGAGTGCTTGATGGATGAGAAGGATGTCAGAAGCTTTATCAAGCGTGATGAATTTGAGCAACTAAGTCTTCCAATTTTGGAACGAGTGAAGGGACCTTTGGAGAAGGCACTTGCAGAGGCAGGTCTTACAGTTGATAATGTTCACATGGTTGAGGTGGTTGGTTCTGGATCTCGTGTACCAGCTATAAACAAAATATTAACGGAGTTCTTCAAAAAGGAGCCAAGGCGGACAATGAATGCTAGTGAGTGTGTTGCGAGGGGTTGTGCATTGCAGTGTGCAATTCTCAGTCCAACTTTTAAAGTACGGGAGTTTCAGGTCAATGAAAGCTTTCCTTTCTCAATTTCTCTCTCATGGAAAGGTGCAAGCTCTGATGCACAGGAAAGTGGACCTGATAGTAAGCAGACCCTTGTCTTCCCTAAGGGAAATCCCATACCGAGTTCCAAGGCACTGACAATCTACAGGCAAGGAACGTTTTCTATTGATGTTCAATATGATGATGTGAGTGGTTTGCAAACACCTGCAAAGATCAGCACATACACTATTGGCCCTTTCCAATCAACAAAAGGTGAAAAAGCAAAAATTAAAGTGAGAGTTAGGTTGAATCTGCATGGAATTGTATCTATCGAATCTGCAACTCTCTTGGAAGAGGAAGAAATTGAGGTTCCTGTTTCCAAAGAATCGTCAGGAGAAAATGCCAAGATGGAAACTGATGAAGCTCCTGCTGATACTGCCACCCCTCCTAGCACCAATGACAATGATGTCAACATGCAAGATGCTAATGCCAATGCTACTGCTGATATCCCTGGGGCTGAAAATGGTACCCCTGAGGCAGGAGATAAGCCTGTGCAAATGGATACTGATACCAAGGTTGAGGCTCCAAAGAAAAAGGTTAAGAAAATAAATCTTCCTGTGGTGGAGTTAGTTTACGGAGCAATGGCAGATGCGGATGTTCAGAAAGCTGTTGAGAAGGAGTTTGAAATGGCTTTGCAAGATCGAGTGATGGAAGAAACAAAAGACAAGAAGAATGCTGTAGAGGCTTATGTTTATGACATGAGAAACAAGCTTAATGACAAATACCAAGAGTTTGTCATTGATTCAGAGAGGGAAGCATTTACTACTAAACTTCAGGAAGTGGAAGACTGGCTATACGAGGATGGTGAAGATGAAACTAAAGGTGTATACATTGCCAAACTAGAAGAGCTCAAGAGGCAAGGTGATCCAATTGAAGAGCGTTACAAAGAATACACGGAGAGGGGTTCAATAATTGACCAACTCGTCTATTGTATAAATAGTTATAGAGACGTTGCAATGGCGAATGATCCCAAATTTGATCACATCGACATTAATGAGAAACAGAAGGTCTTAAATGAATGTTTGGAAGCTGAGAACTGGCTCAGGGAGAAAAAACACCAACAGGACTCGCTTCCAAAATATGCCTCCCCTGTACTTTTGTCAGCTGACATAAGAAAGAAAGCTGAAGCTGTTGACAGGTTCTGTAAGCCAATTATGACAAAACCAAAGCCACCACCACCAAAGCCAGCCACTCCAGAAGCACCGGCAACTCCACCTCCTCAGGGTGGTGAGCAGCAACAGCAGCCGCAACAAACACCAGCTCAGGAGAATCCTAATGCCAGCAGTAATGAAAATGCAGGGGAGGGGGACAATGGTAATCCAGTCCCGCCACCAGCATCTGCTGAACCAATGGAAACTGAGAAATCCGAGAACACAGGCTCTGCTTAA 2595 0.4339 MSVVGFDFGNESCIVAVARQRGIDVVLNDESKRETPAIVCFGDKQRFLGTAGAASTMMNPKNSISQIKRLIGRQFSDPELQRDLKTFPFLVTEGPDGYPLIHARYLGEGKTFTPTQVFGMMLSNLKEIAEKNLSAAVVDCCIGIPLYFTDLQRRAVLDAATIAGLHPLRLFHETTATALAYGIYKTDLPENDQLNVAFVDVGHASMQVCIAGFKKGQLKVLSQSFDRSLGGRDFDEVLFNHFAAKFKGEYKIDVLQNARACLRLRAACEKLKKVLSANPEAPLNIECLMDEKDVRSFIKRDEFEQLSLPILERVKGPLEKALAEAGLTVDNVHMVEVVGSGSRVPAINKILTEFFKKEPRRTMNASECVARGCALQCAILSPTFKVREFQVNESFPFSISLSWKGASSDAQESGPDSKQTLVFPKGNPIPSSKALTIYRQGTFSIDVQYDDVSGLQTPAKISTYTIGPFQSTKGEKAKIKVRVRLNLHGIVSIESATLLEEEEIEVPVSKESSGENAKMETDEAPADTATPPSTNDNDVNMQDANANATADIPGAENGTPEAGDKPVQMDTDTKVEAPKKKVKKINLPVVELVYGAMADADVQKAVEKEFEMALQDRVMEETKDKKNAVEAYVYDMRNKLNDKYQEFVIDSEREAFTTKLQEVEDWLYEDGEDETKGVYIAKLEELKRQGDPIEERYKEYTERGSIIDQLVYCINSYRDVAMANDPKFDHIDINEKQKVLNECLEAENWLREKKHQQDSLPKYASPVLLSADIRKKAEAVDRFCKPIMTKPKPPPPKPATPEAPATPPPQGGEQQQQPQQTPAQENPNASSNENAGEGDNGNPVPPPASAEPMETEKSENTGSA* 865
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lapu5g00142 864 Gene3D - 597 706 IPR029048 -
Lapu5g00142 864 SUPERFAMILY Heat shock protein 70kD (HSP70), peptide-binding domain 384 630 IPR029047 -
Lapu5g00142 864 SUPERFAMILY Heat shock protein 70kD (HSP70), C-terminal subdomain 599 697 IPR029048 -
Lapu5g00142 864 Gene3D - 38 113 - -
Lapu5g00142 864 FunFam Heat shock 70 kDa protein 4 230 313 - -
Lapu5g00142 864 FunFam Heat shock 70 kDa protein 4 597 707 - -
Lapu5g00142 864 SUPERFAMILY Heat shock protein 70kD (HSP70), C-terminal subdomain 708 796 IPR029048 -
Lapu5g00142 864 MobiDBLite consensus disorder prediction 788 808 - -
Lapu5g00142 864 FunFam Heat shock 70 kDa protein 14 387 595 - -
Lapu5g00142 864 FunFam Heat shock 70 kDa protein 4 111 206 - -
Lapu5g00142 864 MobiDBLite consensus disorder prediction 785 864 - -
Lapu5g00142 864 Gene3D - 186 360 - -
Lapu5g00142 864 MobiDBLite consensus disorder prediction 502 575 - -
Lapu5g00142 864 Pfam Hsp70 protein 3 698 IPR013126 GO:0005524|GO:0140662
Lapu5g00142 864 MobiDBLite consensus disorder prediction 809 838 - -
Lapu5g00142 864 CDD HSPA4_like_NDB 2 381 - -
Lapu5g00142 864 Gene3D - 5 374 - -
Lapu5g00142 864 Coils Coil 683 703 - -
Lapu5g00142 864 PRINTS 70kDa heat shock protein signature 332 348 - -
Lapu5g00142 864 PRINTS 70kDa heat shock protein signature 476 492 - -
Lapu5g00142 864 PRINTS 70kDa heat shock protein signature 30 42 - -
Lapu5g00142 864 PRINTS 70kDa heat shock protein signature 140 160 - -
Lapu5g00142 864 PRINTS 70kDa heat shock protein signature 2 15 - -
Lapu5g00142 864 PRINTS 70kDa heat shock protein signature 363 383 - -
Lapu5g00142 864 SUPERFAMILY Actin-like ATPase domain 195 380 IPR043129 -
Lapu5g00142 864 FunFam Heat shock 70 kDa protein 4 38 113 - -
Lapu5g00142 864 Gene3D Actin; Chain A, domain 4 230 313 - -
Lapu5g00142 864 MobiDBLite consensus disorder prediction 503 522 - -
Lapu5g00142 864 Gene3D Substrate Binding Domain Of DNAk; Chain A, domain 1 387 594 IPR029047 -
Lapu5g00142 864 MobiDBLite consensus disorder prediction 527 547 - -
Lapu5g00142 864 SUPERFAMILY Actin-like ATPase domain 1 185 IPR043129 -
Lapu5g00142 864 PANTHER HSC70CB, ISOFORM G-RELATED 1 855 - -
Lapu5g00142 864 FunFam Heat shock 70 kDa protein 4 1 74 - -
Lapu5g00142 864 ProSiteProfiles Ig-like domain profile. 345 462 IPR007110 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lapu5g00142 Lapu-Chr5 1191560 1197323 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lapu5g00142 4 433 Calmodulin-binding Proteins AT1G16030 35.566 7.33e-87 288
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lapu5g00142 K09489 - gmx:100778196 1506.89
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lapu5g00142 5 1191560 1197323 Lapu5g00142 5 1191560 1197323 ECH
Lapu5g00142 5 1191560 1197323 Lapu10g00578 10 7996064 8000592 PCT