Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lapu5g00140 ATGGATGGCATTGAGGATGATGCGAGCTATCACCCTAACCCATATCGCATCATCAGTCACCAACGAGGTTATGGTTATCGGAGTTTTCCATATTCCCTTCCCGTTAATACTGAATATGCCCATCATCAGCATGATGAAGAACAAGAGCACTTAGAAGGAGATGGTGAGGTTGATCAAAGTGACAGCCTTCAGCTTCCCCAAAAGGATGGGGATGAAGAACATGGCATGGATGGGAGTGCTGATGAAAATGATGATGAGGAAGAGGACGTAGAGGATAATAAACAGATTAGTTGTTATGCCACCAAGGGTGAAGATGATTTGGAGTGGCACCCAAAGAAGCAAAAGCTGAAGAGTTTGATTTCAACCTATGAACTTGCTCCTCGAGTGCCAGCGCCCTTAGCTGTAGCTGTAGCTCCTTCAGCTCCCAAACCATCTTCTGGGGGTAGGAATTCACTTACTGACTGGACTGAGCATGAGACATTTGTTCTTCTTGATGCATGGGGTGATAGGTTTCTTCAACATGGAAGGAAGAGTCTTCGATGTGAGGAATGGCAGCAAGTATCGAAAATGGTAGCACAAGTTTCAAAAATCGAAAGGACGGATACTCAGTGTAGAAACCGCCTTGACACATTGAAGAAAAAATACAAGAAGGAGAAGGCTAAATTTCCGGATAGTGTTGGTGGAGACTGCAAATGGGTTTATTTTAAAAGGATGGAGGAGCTAATGAATTCTCCTCCACAACAAGTTGGTATCTCTTGTGGTTTGGACTCAGGAGAATATGTTTTTATGAACCCCAGAGTTTATTTAAATCATGCTAATGGATTGGATGAAATGAGGGATAGTCCTGAGAATATGGAATCTACCGGTGAAGAATGTTCAGATGGACTTCAAGCAAAGAAAAGGAAAGGAAGGAGCAGTGGTGAAGCTTCTTCCTTCAGGTTACTTGCAGATTCCATTAAAAAATTCAGTAAGATATATGAAAAGATAGAAAATAGTAAAAGGCAGCAGATGATGGAACTGGAGAAGATGAGGATGGATTTCCATAAGGATTTGGAAACACAGAAGAGGCAGATTTTAGGGAATTTGCAGTGTGAGATTTCAAAACTAGAGCAGAGAAACGATGAGATCGATGATTCTGCCGAGAATGGTATGTGA 1155 0.4208 MDGIEDDASYHPNPYRIISHQRGYGYRSFPYSLPVNTEYAHHQHDEEQEHLEGDGEVDQSDSLQLPQKDGDEEHGMDGSADENDDEEEDVEDNKQISCYATKGEDDLEWHPKKQKLKSLISTYELAPRVPAPLAVAVAPSAPKPSSGGRNSLTDWTEHETFVLLDAWGDRFLQHGRKSLRCEEWQQVSKMVAQVSKIERTDTQCRNRLDTLKKKYKKEKAKFPDSVGGDCKWVYFKRMEELMNSPPQQVGISCGLDSGEYVFMNPRVYLNHANGLDEMRDSPENMESTGEECSDGLQAKKRKGRSSGEASSFRLLADSIKKFSKIYEKIENSKRQQMMELEKMRMDFHKDLETQKRQILGNLQCEISKLEQRNDEIDDSAENGM* 385
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lapu5g00140 384 Coils Coil 326 346 - -
Lapu5g00140 384 Pfam Myb/SANT-like DNA-binding domain 154 241 IPR044822 -
Lapu5g00140 384 Coils Coil 359 379 - -
Lapu5g00140 384 Gene3D - 155 217 - -
Lapu5g00140 384 MobiDBLite consensus disorder prediction 279 307 - -
Lapu5g00140 384 MobiDBLite consensus disorder prediction 41 93 - -
Lapu5g00140 384 PANTHER TRIHELIX TRANSCRIPTION FACTOR ASIL2 143 373 IPR044823 -
Lapu5g00140 384 MobiDBLite consensus disorder prediction 76 92 - -
Lapu5g00140 384 FunFam trihelix transcription factor ASIL2 155 217 - -
Lapu5g00140 384 MobiDBLite consensus disorder prediction 293 307 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lapu5g00140 Lapu-Chr5 1183620 1185438 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lapu5g00140 300 373 Trihelix Transcription Factor Family AT3G14180 41.892 4.05e-10 59.3
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF Trihelix Lapu5g00140 Myb_DNA-bind_4 3.6e-20 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lapu5g00140 - - gmx:100814194 575.089