Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lapu5g00128 ATGGATGTTACTTCTCTGGGTTCAAATAGCATTACCCAAACCGACCAACACCCTTTGCTGATGGAGCAGCCGGAAAATGGTCGTCAACATGTAATTGACATTACTATGAGTGGTCAAGCTCTAACCATGTCTTCTCACAGTGATCAACACTCTGAAATGCATTTAGCGCAGAATGGAGATCAACCAGCTGGGGACGCACAAGATTCCACTCATCAAGCATCTTCATCTTCTGCATCCAGATTAAACTCTAGAAATTCAGCTTCGTTGAGAAGAGGTGAAGGATATGGTCATCGTGGACGGAGCCCATTGAACTCTGGACTGTGGATTTCTGTTGAGCTTTTTGTCACTGTGAGTCAGATCATAGCATCTATAGTCGTTCTGTCATTGTCCAGGAATGAAAATCCTCAAGCTCCATTATTTGCATGGGTTGTGGGTTATGCATCAGGTTGTGTTGCCACACTTCCCATTCTATATTGGCGTTTTCGAAACCGTAATCAAAGCAATGATCAGGATTCCGCTCAACCATCTCAAGGATCTTCCGGAAGTAATCCTCCAGATCGGACCTATACTGCCATATACGTTTCTCATGTCTCAGACGAGGAGAATGGTCATGCTTCACAATCAGCCACAGGAAACACTATAATTCCTGGAGCCTTTACTTCTAGGCTTAATGGATTAGTAGACCATTTCAAGATGGCCTTGGATTGCTTCTTTGCAGTTTGGTTTGTAGTAGGAAATGTTTGGATCTTTGGAGGTCACACTTCTCCTTCTGATGCTCCACAATTGTATAGGTTATGTATTGTGTTTCTTACCTTTAGCTGTATCGGATATGCAATGCCATTTATACTTTGTGCAACTATTTGTTGCTGCCTACCTTGTATAATTTCTGTTTTGGGCATTCGGGAGGATTTTTCTCAAAATAGAGGAGCAACTGTAGAATCAATTAATGCTTTACCAATCTTCAAGTTCAAATTGAAGAACAATGAAAATGGTGATCAGGATGTCGATGCAGCTATAGATGAAGGTGGAATTTTGGCTGCTGGAACAGAAAAAGAGCGAGTTATTTCAGGAGAAGACGCTGTTTGTTGCATTTGCTTAGCAAAATACGCAGATGATGATGAGCTTAGAGAGTTACCTTGCTCTCACGTTTTTCATGTAGTGTGTGTTGACAAATGGTTAAAGATAAATGCATCATGCCCTCTTTGTAAAACTGAAGTTGGTACGAGTAATGGAGAGTCACCTTCAGCCTGGGACTCCAGTAATAATTAG 1269 0.4161 MDVTSLGSNSITQTDQHPLLMEQPENGRQHVIDITMSGQALTMSSHSDQHSEMHLAQNGDQPAGDAQDSTHQASSSSASRLNSRNSASLRRGEGYGHRGRSPLNSGLWISVELFVTVSQIIASIVVLSLSRNENPQAPLFAWVVGYASGCVATLPILYWRFRNRNQSNDQDSAQPSQGSSGSNPPDRTYTAIYVSHVSDEENGHASQSATGNTIIPGAFTSRLNGLVDHFKMALDCFFAVWFVVGNVWIFGGHTSPSDAPQLYRLCIVFLTFSCIGYAMPFILCATICCCLPCIISVLGIREDFSQNRGATVESINALPIFKFKLKNNENGDQDVDAAIDEGGILAAGTEKERVISGEDAVCCICLAKYADDDELRELPCSHVFHVVCVDKWLKINASCPLCKTEVGTSNGESPSAWDSSNN* 423
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lapu5g00128 422 ProSiteProfiles Zinc finger RING-type profile. 362 403 IPR001841 -
Lapu5g00128 422 MobiDBLite consensus disorder prediction 41 89 - -
Lapu5g00128 422 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 344 411 IPR013083 -
Lapu5g00128 422 PANTHER C3H4 TYPE ZINC FINGER PROTEIN 22 406 - -
Lapu5g00128 422 Pfam Ring finger domain 362 403 IPR001841 -
Lapu5g00128 422 SMART ringv_2 361 403 IPR011016 GO:0008270
Lapu5g00128 422 MobiDBLite consensus disorder prediction 167 186 - -
Lapu5g00128 422 FunFam E3 ubiquitin-protein ligase 345 412 - -
Lapu5g00128 422 SMART ring_2 362 402 IPR001841 -
Lapu5g00128 422 MobiDBLite consensus disorder prediction 41 97 - -
Lapu5g00128 422 SUPERFAMILY RING/U-box 354 409 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lapu5g00128 Lapu-Chr5 1074607 1079372 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lapu5g00128 1 413 C3H Transcription Factor Family AT1G80400 57.554 1.02e-169 480
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lapu5g00128 - - gmx:100819516 756.903
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lapu5g00128 5 1074607 1079372 Lapu5g00128 5 1074607 1079372 ECH