Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lapu5g00127 ATGGAATTGTGTTTGAGAGCAATGTGGTCACAATCTCAAAGTAGCATCCACTCGTCAGAATCTGACACCGTTGATTCTAACCTGAAGGAGACGGAGCTCACCCTGGGTCTTCCCGGTACCAAAACTGCCACCAAACGTACCTTCTCCGACACCGTTGATCTTCATCTTGCCACTTCCTTAAATAAATCCAAATTCCCAACACCCAAGGAACAAGTGGTGGGGTGGCCGCCGGTGAGGGCAAGCAGGAAGAATGCCATGAAGAGTTGTTGCAAGTTTGTGAAAGTGGCTGTGGATGGAGCTCCTTATCTAAGAAAAGTGGATCTTGAAATGTACGACAGCTATGAGCATTTGATGAGGGAATTAGAGACCATGTTTTGTGGCTTAGCCATTCGTAATCATTTGATGAATGAGAGGAAACTCATGGACTCTGGAAATGAGATTGAATACATGCCCACCTATGAAGATAGAGATGGTGACTGGATGTTGGTCGGGGATGTACCATGGAAGATGTTTGTTGAATCATGCAAGAGGATAAGACTTATGATTAGCTCGGAGGCTATTGGTCTAGGTCCGAGATCTAGTTCAAAATGTTCGGGTTCCACCTAG 606 0.4554 MELCLRAMWSQSQSSIHSSESDTVDSNLKETELTLGLPGTKTATKRTFSDTVDLHLATSLNKSKFPTPKEQVVGWPPVRASRKNAMKSCCKFVKVAVDGAPYLRKVDLEMYDSYEHLMRELETMFCGLAIRNHLMNERKLMDSGNEIEYMPTYEDRDGDWMLVGDVPWKMFVESCKRIRLMISSEAIGLGPRSSSKCSGST* 202
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lapu5g00127 201 FunFam Auxin-responsive protein 85 193 - -
Lapu5g00127 201 PANTHER AUXIN-RESPONSIVE PROTEIN IAA17 27 188 IPR003311 GO:0005634|GO:0006355
Lapu5g00127 201 SUPERFAMILY CAD & PB1 domains 83 182 - -
Lapu5g00127 201 Gene3D - 85 195 - -
Lapu5g00127 201 ProSiteProfiles PB1 domain profile. 90 185 IPR000270 GO:0005515
Lapu5g00127 201 Pfam AUX/IAA family 29 88 IPR033389 -
Lapu5g00127 201 Pfam AUX/IAA family 89 192 IPR033389 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lapu5g00127 Lapu-Chr5 1048402 1063767 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lapu5g00127 77 186 B3 DNA Binding Superfamily AT3G61830 30.909 6.75e-09 53.1
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR AUX/IAA Lapu5g00127 AUX_IAA 2.2e-52 CL0072
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lapu5g00127 K14484 - gmx:100815098 314.309