Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lapu5g00124 ATGAGTGGGAAGAGTTTGTTGAGTGGCATGCTAGAGCACCTTAAATTGGCGAGAGAGTACGCGGCGGAAGGACAATACGACACCTCTGTCATCTTCTTCGACGGCGCCGTTGCCCAAATCAGCAACCACCTCAACTCCGTCGACGACCCTTTAGTAAGAGCCAAATGGATGAACGTGAAGAAAGCGATAAGACCCGCCAGGCCCACTGCTCGAAAGGACGAGGCTTGGGGCCGAGGCTCTACCAGGCCCGCTACTCGTGCTATAAAGCCCAGCAGGGTTAGCTCGGGGGCCCGACCACCCACCAATGGAAAGAACGGCGGCGGCGGTGCTTCTGGAAAGTGGAGCAGGGCAGCTGATTCTTCACGTTCAGTTAATGGTGATGAGAAAAAGTCAAAAAAGTATGAGTATGAAGGTCCTGATCCTGAGTTGGCGGAAATGTTGGAAAGGGATGTGTTAGAAAGGTCTCCTGGTGTGAGATGGGATGATGTTGCAGGCCTCACTCAAGCCAAAAGCCTTCTAGAAGAAGCTGTTGGAATAAGGAGACCCTGGAAAGGTGTTCTCATGTTTGGGCCTCCAGGAACTGGGAAAACGCTTCTTGCTAAAGCAGTTGCTACTGAATGTGGTACCACTTTCTTTAACGTTTCTTCTGCTACTTTGGCTTCTAAATGGCGTGGAGAGAGCGAGCGCATGGTACGATGCTTGTTTGATCTTGCAAGAGCATATGCACCCAGTACCATTTTCATTGATGAAATTGATTCTCTATGCAATGCTAGGGGGGCTTCTGGGGAACATGAATCATCCAGAAGGGTGAAGTCTGAACTTCTAGTTCAGATTGATGGTGTAAATAATAGTTCCACAAATGAAGATGGAACCCGTAAGATAGTAATGGTTTTGGCAGCCACTAACTTTCCATGGGACATAGATGAAGCACTGAGGAGAAGGTTGGAAAAGCGTATATACATTCCTCTTCCAAATTTGGAGAGTCGTAAAGAGCTGATCCGTATCAATTTGAGGACTAAGACAATAAGTAGTGTTGTGTGGCACCATGCAGGTGGCCCCTGA 1062 0.4849 MSGKSLLSGMLEHLKLAREYAAEGQYDTSVIFFDGAVAQISNHLNSVDDPLVRAKWMNVKKAIRPARPTARKDEAWGRGSTRPATRAIKPSRVSSGARPPTNGKNGGGGASGKWSRAADSSRSVNGDEKKSKKYEYEGPDPELAEMLERDVLERSPGVRWDDVAGLTQAKSLLEEAVGIRRPWKGVLMFGPPGTGKTLLAKAVATECGTTFFNVSSATLASKWRGESERMVRCLFDLARAYAPSTIFIDEIDSLCNARGASGEHESSRRVKSELLVQIDGVNNSSTNEDGTRKIVMVLAATNFPWDIDEALRRRLEKRIYIPLPNLESRKELIRINLRTKTISSVVWHHAGGP* 354
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lapu5g00124 353 Gene3D - 156 324 IPR027417 -
Lapu5g00124 353 ProSitePatterns AAA-protein family signature. 295 314 IPR003960 GO:0005524|GO:0016887
Lapu5g00124 353 SMART AAA_5 182 325 IPR003593 GO:0016887
Lapu5g00124 353 Gene3D - 4 65 - -
Lapu5g00124 353 CDD Kp60-NTD 8 63 - -
Lapu5g00124 353 Gene3D - 325 341 - -
Lapu5g00124 353 FunFam Katanin p60 ATPase-containing subunit A1 5 66 - -
Lapu5g00124 353 FunFam Katanin p60 ATPase-containing subunit A1 155 334 - -
Lapu5g00124 353 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 148 342 IPR027417 -
Lapu5g00124 353 Pfam ATPase family associated with various cellular activities (AAA) 186 323 IPR003959 GO:0005524|GO:0016887
Lapu5g00124 353 MobiDBLite consensus disorder prediction 63 140 - -
Lapu5g00124 353 MobiDBLite consensus disorder prediction 122 140 - -
Lapu5g00124 353 PANTHER AAA DOMAIN-CONTAINING 23 340 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lapu5g00124 Lapu-Chr5 1026278 1030242 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lapu5g00124 104 344 Calmodulin-binding Proteins AT3G56690 39.922 2.81e-40 149
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lapu5g00124 K07767 - smo:SELMODRAFT_135916 430.639