Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lapu5g00117 ATGTCGGAGGGAAATGGAGACAAAAAAAGAAGAACGCTCATAATTGGTGTTTCAACCTTATTCTCATTGGCTATAATTGGGGCTATCATATTTGGTGTCAACCTTATTGATGGTTCAAATGATGATACAGAGAATAACGAAAAGAATCATGTTGCTTCCACTGTAAAAGCTGTTCAAAACCTTTGTCATCCCACAAATTATAAGAAAGAATGTGAGGAAAGTCTCATGACAGGAGCCAAAAACACCACAGATCCCAAAGAACTTATTAAAATTGCCTTCAATATCACCATTACCAAAATTGGTGATAAAATCAAAGAAGCTAATCTCTTGGAAGACGTTGAGAAGGAGCCAAGAGCCAAGATGGCACTCGACACATGCAAACAACTCATGGATCTTTCAATTGAGGAGTTAACAAGGTCCATTGATGAAATAGATGACTTTTCCCTAATAAGTGTTGACAAAATCCTCATGAATGTAAAAGTTTGGCTCAGTGGCGCAATTACATACCAAGATACTTGCTTGGATGGGTTTGAGAACACCACTAGTGAAGCAGGTAAAAAGATGCAGGATTTATTAATGACAGGCATGCATATGAGTAGCAATGCTCTTGCAATTGCTACAGAATTGGCTGATACTCTTACAAATTTGAATGTCACAAATTTACTTGGACATCGTGTCCTTCAAGATTCTAACCTTCCCTCATGGGTTGATCATCATGGACTACTCCATGAAAATTCAAGTATATTTAATCACAAGCCTAATGTGACAGTAGCCAAAGATGGTACTGGAGATTTCAAAAGCATCAACGAGTCATTGCAGCAAGTGCCCGAGAAAAACCGAAAACCATTTGTGATCTACATCAAAGAAGGCATATACCAAGAATATGTTGAAGTTACTAAGAAGATGAATCATGTGGTTTTCATTGGTGATGGTGGAAAAAAGACACGAATAACAGGAAACAAAAACTATATTGATGGAATTAACACTTACAGAACGGCCACTGTTGCTATTCAAGGAGATCACTTTGTGGCCATCAATATGGGATTTGAGAACTCTGCAGGACCTCACAAGCATCAGGCAGTGGCATTGAGAGTCCAAGCAGACAAGTCAATCTTCTACAATTGCTCAATGGATGGGTATCAAGACACTCTTTACGTACACACTATGCGTCAATTCTATAGGGATTGCACCATTTCAGGCACCATCGACTTTGTGTTTGGAAATGCACTTGCTGTTTTCCAAAATTGCACTTTCGTGGTCCGGAAGCCAATGAAAAACCAACAATGCATTGTGACTGCGCAAGGTAGGAAAGAGAAGCAACAACCATCTGGAATTGTAATCCAAGGGGGTTCCATTGTCTCTGATCCTGAGTTTTACTCAGTACGATTTGAGAATAAAGCTTACCTAGCTCGTCCATGGAAGAATTATTCTAGGACCATTATCATGGACACTTACATTGATGATTTGATTCACCCTGATGGGTATTTACCATGGCAAGGATTAGAAGGCCCTTCTGGTATGGATACTTGCTTTTATGCTGAGTATCACAACACTGGTCCGGGTTCAAACAAATCCAAGCGTGTGAATTGGTCTGGGATTTGGAATCTCAATTCAAAAGCTGCTCATTGGTTCTCACCTTCCAAATTCTTTCATGGAACCGACTGGATTAAGGCTACAGGAATTCCTTGCTTTCCTGGTGTGCCCACACACCATAGGCACAACAAGACTATACATAAATGGTGA 1743 0.3987 MSEGNGDKKRRTLIIGVSTLFSLAIIGAIIFGVNLIDGSNDDTENNEKNHVASTVKAVQNLCHPTNYKKECEESLMTGAKNTTDPKELIKIAFNITITKIGDKIKEANLLEDVEKEPRAKMALDTCKQLMDLSIEELTRSIDEIDDFSLISVDKILMNVKVWLSGAITYQDTCLDGFENTTSEAGKKMQDLLMTGMHMSSNALAIATELADTLTNLNVTNLLGHRVLQDSNLPSWVDHHGLLHENSSIFNHKPNVTVAKDGTGDFKSINESLQQVPEKNRKPFVIYIKEGIYQEYVEVTKKMNHVVFIGDGGKKTRITGNKNYIDGINTYRTATVAIQGDHFVAINMGFENSAGPHKHQAVALRVQADKSIFYNCSMDGYQDTLYVHTMRQFYRDCTISGTIDFVFGNALAVFQNCTFVVRKPMKNQQCIVTAQGRKEKQQPSGIVIQGGSIVSDPEFYSVRFENKAYLARPWKNYSRTIIMDTYIDDLIHPDGYLPWQGLEGPSGMDTCFYAEYHNTGPGSNKSKRVNWSGIWNLNSKAAHWFSPSKFFHGTDWIKATGIPCFPGVPTHHRHNKTIHKW* 581
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lapu5g00117 580 Gene3D Invertase/pectin methylesterase inhibitor family protein 53 210 IPR035513 -
Lapu5g00117 580 Pfam Pectinesterase 254 552 IPR000070 GO:0030599|GO:0042545
Lapu5g00117 580 SMART PMEI_2 53 205 IPR006501 GO:0004857
Lapu5g00117 580 Pfam Plant invertase/pectin methylesterase inhibitor 57 205 IPR006501 GO:0004857
Lapu5g00117 580 FunFam Pectinesterase 54 210 - -
Lapu5g00117 580 CDD PMEI-like_3 61 210 - -
Lapu5g00117 580 ProSitePatterns Pectinesterase signature 2. 398 407 IPR033131 -
Lapu5g00117 580 SUPERFAMILY Pectin lyase-like 251 564 IPR011050 -
Lapu5g00117 580 NCBIfam pectinesterase inhibitor domain 53 209 IPR006501 GO:0004857
Lapu5g00117 580 ProSitePatterns Pectinesterase signature 1. 279 298 IPR018040 -
Lapu5g00117 580 Gene3D - 251 568 IPR012334 -
Lapu5g00117 580 SUPERFAMILY Plant invertase/pectin methylesterase inhibitor 57 209 IPR035513 -
Lapu5g00117 580 FunFam Pectinesterase 249 567 - -
Lapu5g00117 580 PANTHER PECTINESTERASE 24 557 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lapu5g00117 Lapu-Chr5 956550 958608 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lapu5g00117 1 567 Carbohydrate Esterase AT3G05610 48.252 0.0 598
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lapu5g00117 K01051 - gmx:100820556 1000.73