Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lapu5g00116 ATGGCTATAATTGGGACTATCATATTTGGTGTCAACCTTGTTGATGCTTCAAATGATGATACAGAGAATAACGAAAAGAATCATGTTGCTTCCACTGTAAAAGCTGTTCAAAATATTTGTCATCCCACAGATTATGAGAATGAATGTGAGGAAAGTCTCATGACTGAAGCCAAAAACATCACAGATCCAAAAGAACTTATTAAAATTGCCTTCAATATCACCATTACCAAAATTGGTGATAAAATCAAAGAAGCTAATATCTTGGAAGACATTGAGAAGGAGCCAAGAGCCAAGATGGCACTCGACACATGCAAACAACTCATGGATCTTTCAATTGAGGAGTTAACAAGGTCAATTGATGAAATAAATGACTTTTCCCTATTAAATGTTGACAAAATCCTCATGAATGTAAAAGTTTGGCTCAGTGGCGCAATTACATACCAAGATACTTGCTTGGATGGGTTTGAGAACACCACTAGTGAAGCAGGTAAAAAGATGCAGGATTTATTAACGACAAGCATGGATATGAGTAGCAATGCTCTTCAACTTGTTACAAATTTGGCTGATACTTTTACAAATTTGAATGTCACAAATTTATTTGGACATCGCATCCTTCAAGATTCTGAGCTTCCCTCATGGGTTGATCATTATGGACTACTCCATGAAAATTCAAGTATATTTAATCACAAGCCTAATGTGACAGTAGCCAAAGATGGTACTGGAAATTTCAAAAGCATCAACGAGTCATTGCAGCAAGTGCCCGAGAAAAACCGAAAACCATTTGTGATCTACATCAAAGAAGGCATATACCAAGAGTATCTTGAAGTTACTAAGAAGATGACTCATGTGGTTTTCATTGGTGATGGTGGAAAAAAGACACGAATAACAGGAAACAAAAACTATATTGATGGAATTAACACTTACAGAACGGCCACTGTTGCTATTCAAGGAGATCACTTTGTGGCCATCAATATGGGATTTGAGAACTCTGCAGGACCTCACAAGCATCAGGCAGTGGCATTGAGAGTCCAAGCAGACAAGTCAATCTTCTACAATTGCTCAATGGATGGGTATCAAGACACTCTTTATGTACACACTATGCGTCAATTCTATAGGGATTGCACCATTTCAGGCACCATCGACTTTGTGTTTGGAAATGCACTTGCTGTTTTCCAAAATTGCACTTTCGTGGTCCGGAAGCCAATGAAAAACCAACAATGCATTGTGACTGCGCAAGGTAGGAAAGAGAAGCAACAACCATCTGGAATTGTAATCCAAGGGGGTTCCATTGTCTCTGATCCTGAGTTTTACTTAGTACGATTTGAGAATAAAGCTTACCTAGCTCGTCCATGGAAGAATTATTCTAGGACCATTATCATGGACGCTTACATTGATGATTTGATTCACCCTGATGGGTATTTACCATGGCAAGGATTAGAAGGCCCTTCTGGTATGGATACTTGCTTTTATGCTGAGTATCACAACACTGGTCCGGGTTCAAACAAATCCAAGCGTGTGAATTGGTCTGGGATTATGAATCTCAATTCAAAATCTGCTCATTGGTTCTCACCTTCCAAATTCTTTCATGGAACTGACTGGATTAAGGCTACAGGAATTCCTTGCTTTCCTGGTGTGCCCACACACCATAGGCACAACAAGACGATACATAAATGGTAA 1677 0.3906 MAIIGTIIFGVNLVDASNDDTENNEKNHVASTVKAVQNICHPTDYENECEESLMTEAKNITDPKELIKIAFNITITKIGDKIKEANILEDIEKEPRAKMALDTCKQLMDLSIEELTRSIDEINDFSLLNVDKILMNVKVWLSGAITYQDTCLDGFENTTSEAGKKMQDLLTTSMDMSSNALQLVTNLADTFTNLNVTNLFGHRILQDSELPSWVDHYGLLHENSSIFNHKPNVTVAKDGTGNFKSINESLQQVPEKNRKPFVIYIKEGIYQEYLEVTKKMTHVVFIGDGGKKTRITGNKNYIDGINTYRTATVAIQGDHFVAINMGFENSAGPHKHQAVALRVQADKSIFYNCSMDGYQDTLYVHTMRQFYRDCTISGTIDFVFGNALAVFQNCTFVVRKPMKNQQCIVTAQGRKEKQQPSGIVIQGGSIVSDPEFYLVRFENKAYLARPWKNYSRTIIMDAYIDDLIHPDGYLPWQGLEGPSGMDTCFYAEYHNTGPGSNKSKRVNWSGIMNLNSKSAHWFSPSKFFHGTDWIKATGIPCFPGVPTHHRHNKTIHKW* 559
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lapu5g00116 558 SUPERFAMILY Pectin lyase-like 229 542 IPR011050 -
Lapu5g00116 558 Pfam Pectinesterase 232 530 IPR000070 GO:0030599|GO:0042545
Lapu5g00116 558 Pfam Plant invertase/pectin methylesterase inhibitor 35 182 IPR006501 GO:0004857
Lapu5g00116 558 ProSitePatterns Pectinesterase signature 2. 376 385 IPR033131 -
Lapu5g00116 558 NCBIfam pectinesterase inhibitor domain 31 187 IPR006501 GO:0004857
Lapu5g00116 558 Gene3D - 229 546 IPR012334 -
Lapu5g00116 558 ProSitePatterns Pectinesterase signature 1. 257 276 IPR018040 -
Lapu5g00116 558 Gene3D Invertase/pectin methylesterase inhibitor family protein 31 188 IPR035513 -
Lapu5g00116 558 PANTHER PECTINESTERASE 18 535 - -
Lapu5g00116 558 SUPERFAMILY Plant invertase/pectin methylesterase inhibitor 35 187 IPR035513 -
Lapu5g00116 558 FunFam Pectinesterase 32 188 - -
Lapu5g00116 558 CDD PMEI-like_3 39 188 - -
Lapu5g00116 558 SMART PMEI_2 31 183 IPR006501 GO:0004857
Lapu5g00116 558 FunFam Pectinesterase 227 545 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lapu5g00116 Lapu-Chr5 948695 950688 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lapu5g00116 1 545 Carbohydrate Esterase AT3G05610 47.532 0.0 577
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lapu5g00116 K01051 - gmx:100820556 962.985