Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lapu5g00103 ATGGAGGATCAATCCAAGGAAGAGTATATTGGATCCTTAAGAAGAAAAAGTAGCGGCTTCTCTCGTGGCGTCTCAAAATTTAGAGGCGTAGCAAGACACCATCACAATGGAAGATGGGAAGCTCGAATTGGCAGAGTTTTCGGCAATAAATATCTATACCTTGGAACTTACGGTACAGAAGAAGAAGCAGCGATGGCGTACGATATGGCGGCCATAGAGTATCGTGGACTTAATGCTGTTACCAACTTTGACCTTAGTCGTTATGTGAAATCGCTGCGTCCAGAAGACCAACCTCAACTTCAAGCCCACCATGTCAGCCCAAGCCCAACCACACCATCTGGACCTGAATCAGGCAATGCCACCGCAACATTGGGCCCTCCGCCGCCTCCGCCTCCGCCTCCGCCACCTTCTTTACCCTCCACCTCAAATCCTCCTCCTCCTCGCACATTCCCTGAAGATATTCAAACTTTTTTTGAAACTCAAGATTCGGCTGGAATCTACACAGACACTGATGACATTATATTTGGCGACTTCACTTCCATTGCTTCACCAATTTTTCACTGTGACCTTAATGCTTAA 579 0.4715 MEDQSKEEYIGSLRRKSSGFSRGVSKFRGVARHHHNGRWEARIGRVFGNKYLYLGTYGTEEEAAMAYDMAAIEYRGLNAVTNFDLSRYVKSLRPEDQPQLQAHHVSPSPTTPSGPESGNATATLGPPPPPPPPPPPSLPSTSNPPPPRTFPEDIQTFFETQDSAGIYTDTDDIIFGDFTSIASPIFHCDLNA* 193
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lapu5g00103 192 Pfam AP2 domain 25 76 IPR001471 GO:0003700|GO:0006355
Lapu5g00103 192 CDD AP2 25 86 IPR001471 GO:0003700|GO:0006355
Lapu5g00103 192 SUPERFAMILY DNA-binding domain 25 86 IPR016177 GO:0003677
Lapu5g00103 192 SMART rav1_2 26 90 IPR001471 GO:0003700|GO:0006355
Lapu5g00103 192 Gene3D AP2/ERF domain 25 86 IPR036955 GO:0003700|GO:0006355
Lapu5g00103 192 MobiDBLite consensus disorder prediction 101 120 - -
Lapu5g00103 192 FunFam AP2-like ethylene-responsive transcription factor 25 86 - -
Lapu5g00103 192 PANTHER AP2-LIKE ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR 1 119 - -
Lapu5g00103 192 ProSiteProfiles AP2/ERF domain profile. 26 84 IPR001471 GO:0003700|GO:0006355
Lapu5g00103 192 MobiDBLite consensus disorder prediction 96 153 - -
Lapu5g00103 192 MobiDBLite consensus disorder prediction 122 151 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lapu5g00103 Lapu-Chr5 860064 863183 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lapu5g00103 1 191 AP2-EREBP Transcription Factor Family AT1G79700 57.068 2.45e-59 183
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Lapu5g00103 AP2 1.1e-13 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lapu5g00103 K09285 - gmx:100807781 228.409