Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lapu5g00102 ATGAAGAAGACGAAGGAGTTCTCAGTCTCAACCACAGGCACTTACAGTTCTCTCTATTTCAATCCTCTGAACCACCCCACCCACTGCCGCAGCTCCAGCACAGACTGTGTCCGCAAACCTCACTTTGAATTTCAAGATCTTCACGCTGACAAGGAAAACCAAGATCACAATGCCCACATGCCCAAGCCCAAACCCTTCAGGTCTCTCTCCACTGACAGGATCTTCAAGCCCTCCTCGCTCCAATTCTGCATGCAGATGAACCATCTTCAAACCTCCCTCAACATTTGGGACTACTCTGATTCCGACTCAGCTCCGGCTTCCTCCTGGTCCACACTGCCCAACAGGTCCTTGATCTGTAGACCCTTGCCTTTAGATGTCGGAAGGTGCACATGTTTTATTCTCAAGGAGCCAACGCCCCACGGACTCTCAGGGGGCACTTTCTTCTCTCTTTATACCAATGAAGGCCAGGGACGGCAGAATAGGAAACTGGCCGTGGCCCACCACAAGCGCCGGAACGGGAGGTCTTACTTCACCATAGCTCAGAATGTAAAAGGACTACTCTCCCATTCCGATGATGCTTTTCTTGGCACCGTGACAGCTAACCTCGTTGGCTCAAAATACAACATTTGGGATCAGGCGTATCGTCATAATTCCCGTAATAAACAACCAAAGCCACCTCTTGCTGTTGTGACCTATATACCTACCATAACAACATGTACTGGAAGTCACAGAAGCATGAGGGCATATGTCCCCAAGCATCAATACATGCCACTCAAGAACACAACCCAGGTACAACATATAAAAGGATTGCCAATGAATTGGGAGGGAAAGCTGGACAAGGTCCACCAACTGTTCTCAAAGTCTCCACTTTACAACAAGATTTCAAAGCAATACGAGCTTGACTTTAGAGATAAAGGAAAGGTGGGACTCAAAATCCAAAGATCGGTTAAAAATTTCCAGCTAACTTTAGAGGAGAATGGGAGGCAGACGATACTGCAGCTGGGAAGGGCTGGAAAATCAAAATTCGTTATGGACTACAGGTATCCTTTGACAGGTTACCAGGCGTTTTGCATGTGTTTGGCTTCCATGGATGCAAAGCTTTGTTGCACGGTGTAA 1116 0.4758 MKKTKEFSVSTTGTYSSLYFNPLNHPTHCRSSSTDCVRKPHFEFQDLHADKENQDHNAHMPKPKPFRSLSTDRIFKPSSLQFCMQMNHLQTSLNIWDYSDSDSAPASSWSTLPNRSLICRPLPLDVGRCTCFILKEPTPHGLSGGTFFSLYTNEGQGRQNRKLAVAHHKRRNGRSYFTIAQNVKGLLSHSDDAFLGTVTANLVGSKYNIWDQAYRHNSRNKQPKPPLAVVTYIPTITTCTGSHRSMRAYVPKHQYMPLKNTTQVQHIKGLPMNWEGKLDKVHQLFSKSPLYNKISKQYELDFRDKGKVGLKIQRSVKNFQLTLEENGRQTILQLGRAGKSKFVMDYRYPLTGYQAFCMCLASMDAKLCCTV* 372
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lapu5g00102 371 PRINTS Tubby superfamily signature 307 323 IPR000007 -
Lapu5g00102 371 PRINTS Tubby superfamily signature 348 370 IPR000007 -
Lapu5g00102 371 PRINTS Tubby superfamily signature 194 218 IPR000007 -
Lapu5g00102 371 PRINTS Tubby superfamily signature 327 346 IPR000007 -
Lapu5g00102 371 Pfam Tub family 120 364 IPR000007 -
Lapu5g00102 371 SUPERFAMILY Tubby C-terminal domain-like 106 370 IPR025659 -
Lapu5g00102 371 PANTHER TUBBY-RELATED 83 368 - -
Lapu5g00102 371 Gene3D Tubby Protein; Chain A 110 370 IPR025659 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lapu5g00102 Lapu-Chr5 856891 859661 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lapu5g00102 66 264 TUB Transcription Factor Family AT1G16070 54.795 1.52e-79 244
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF TUB Lapu5g00102 Tub 2.5e-41 CL0395
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lapu5g00102 K19600 - gmx:100803500 543.888