Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lapu5g00096 ATGGCTGTTCAAACCCAACAGGGAAAGGAATTCATTTTCAGGTCCAAGCTTCCGGATATCTACATCCCCAAACACCTTCCCCTCCACGCATACTGCTTCCAGAATTTGCAGGACCACGGCTCACGCCCCTGTCTCATCAATGCCCCCACCGGAGCTGTCTACACCTACTCCGACGTCGACGCCACCGCCCGAAAAGTCGCCTCTGGCCTCCACAAATTGGGGGTGCGACAGGGCGAGGTCATCATGATCCTTCTCCCCAATTGCCCCGAATTCGTCTTTGCGTTTCTCGGGGCGTCTTATCGCGGAGCCATGGCCACTGCGGCCAACCCCTTCTTCACTCCGGCGGAGATTGCGAAGCAAGCCAAGGCATCCAATGCCAAGGTGCTCATCACGCAGGCCTCTTACTACGAGAAGGTTAAGGAGCTGGATGTTAAGTTGGTGTTCGTGGACTCGTGTCCGGCGGAGGGAGGTGAGGATGAGGGTCACATCCATTTCTCGGAGATGTGTGAGGGGAAGGAGGAGATGGATGAGGTGGAGATAAGTGGGGATGACGTGGTGGCATTGCCGTATTCGTCGGGGACAACGGGGCTTCCGAAAGGTGTGATGCTGACTCACAAGGGGCTGGTCACCAGCATTGGTCAGCAGGTGGACGGTGAGAATCCCAACCTCTACTACCACTGCGACGACAACATCCTCTGCGTTCTTCCCCTGTTCCACATATACTCCCTCAACTCTGTTCTGCTCTGTGGCTTGCGTTCCAAGGCTACCATTCTCCTCATGCCCAAGTTCGAAATCAAGGCCCTCCTCGCCCTCATTCACAACTACAAAGTCACTGTTGCCCCCGTCGTTCCACCCATCGTTCTCGCCATTGCCAACTCTCCCCATCTCTCCAACTACGACCTCTCTTCCATCAGGCTCTTCAAGTCCGGTGGAGCCCCTCTCGGAAAAGACCTCGAAGACACTATCAGGGCCAAATTCCCCAAGGCCAGACTCGGCCAGGGTTACGGAATGACCGAGGCAGGTCCTGTGCTAACGATGTCCTTAGCCTTTGCTAAAGAACCCATGCACGTGAAAGCAGGTGCATGTGGGACCGTCGTGAGAAATGCAGAGATGAAAATTGTGGATCCTGAAACCGGCCATTCCCTACCTCGAAACCAGTCCGGTGAAATCTGCATCAGAGGCGACCAGATAATGAAAGGTTATCTGAATGACAAAGAGGCGACAGAGAGGACTATAGACAAAGAGGGGTGGCTGCACACAGGTGACATCGGATACATCGACGACGACGACGAGTTATTCATCGTTGATAGGTTAAAGGAACTCATAAAATACAAAGGATTTCAGGTGGCTCCAGCCGAACTTGAAGCCCTTCTTCTCACTCATTCTAACATCTCTGACGCTGCCGTCGTTCCAATGAAGGATGAAGCCGCGGGAGAAGTACCTGTTGCATTTGTGGTGACATCAAACGCTGCCATCGACACAACCCAGGATGAAATTAAGCACTTTATCTCCAAACAGGTGGTGTTTTACAAAAGAATAAACACAGTATTCTTCGTTGATGCAATTCCCAAGTCACCATCAGGCAAGATCTTGCGTAAGGATCTACGAGCAAAGCTTGCACCACCAGCGCTAACCAAATGA 1641 0.5265 MAVQTQQGKEFIFRSKLPDIYIPKHLPLHAYCFQNLQDHGSRPCLINAPTGAVYTYSDVDATARKVASGLHKLGVRQGEVIMILLPNCPEFVFAFLGASYRGAMATAANPFFTPAEIAKQAKASNAKVLITQASYYEKVKELDVKLVFVDSCPAEGGEDEGHIHFSEMCEGKEEMDEVEISGDDVVALPYSSGTTGLPKGVMLTHKGLVTSIGQQVDGENPNLYYHCDDNILCVLPLFHIYSLNSVLLCGLRSKATILLMPKFEIKALLALIHNYKVTVAPVVPPIVLAIANSPHLSNYDLSSIRLFKSGGAPLGKDLEDTIRAKFPKARLGQGYGMTEAGPVLTMSLAFAKEPMHVKAGACGTVVRNAEMKIVDPETGHSLPRNQSGEICIRGDQIMKGYLNDKEATERTIDKEGWLHTGDIGYIDDDDELFIVDRLKELIKYKGFQVAPAELEALLLTHSNISDAAVVPMKDEAAGEVPVAFVVTSNAAIDTTQDEIKHFISKQVVFYKRINTVFFVDAIPKSPSGKILRKDLRAKLAPPALTK* 547
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lapu5g00096 546 PANTHER LONG-CHAIN-FATTY-ACID--COA LIGASE 9 537 - -
Lapu5g00096 546 Pfam AMP-binding enzyme 35 444 IPR000873 -
Lapu5g00096 546 Pfam AMP-binding enzyme C-terminal domain 453 529 IPR025110 -
Lapu5g00096 546 Gene3D - 6 438 IPR042099 -
Lapu5g00096 546 FunFam Long-chain-fatty-acid--CoA ligase FadD 14 439 - -
Lapu5g00096 546 SUPERFAMILY Acetyl-CoA synthetase-like 12 541 - -
Lapu5g00096 546 CDD 4CL 22 535 - -
Lapu5g00096 546 ProSitePatterns Putative AMP-binding domain signature. 188 199 IPR020845 -
Lapu5g00096 546 Gene3D - 439 540 IPR045851 -
Lapu5g00096 546 FunFam 4-coumarate--CoA ligase 2 440 541 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lapu5g00096 Lapu-Chr5 806047 808554 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lapu5g00096 5 507 Monolignol Biosynthesis Gene Families AT1G51680 69.650 0.0 702
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lapu5g00096 K01904 - gmx:547944 894.034