Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lapu5g00089 ATGCAATTAGCGTCGAATGGCGACAAGGAAGTATGTTCAGAAAGCGAACCCATCTTGAATCACCACCATCTTCATTTGCAACCACCTGAAGAATCCTCCTTTTCCTGTGAAATTATTCCTATTGCTCCCAACCATGACGCCGACCATGATTTACAAAATGTTCGGGTTGATGAGACTTGTCATCTCGTAAATGCAGACCAGCCACAATGCCGAATATGCCTCGATATTGGAGGAGAAGATTTAATTGCTCCATGCCATTGCAAAGGTACACAAAAGTACGTCCACAGATCATGTCTTGATTATTGGAGATCCACCAAGGAGGGCTTCGCCTTTTCTCACTGTACAGAGTGCAGAGCTGTCTTCATATTACGTGCGAATGTCCCACCAGATCGATGGTGGTTGAGATTAAAATTTCAGTTCCTTGTTGCTAGGGATCATGCATTCATTTTCATAATTGTTCAACTGGTTGTTGCTTTCTTGGGAGTGCTTGTGTACAAATTTTATGGAGATGAACTGAGGGAAATGTTTGGTTATGAAGAACATCCATATGGATTTTATACAATGGCTGGTATATACCCATTGCTTACCCGGAAGAAATTTCATGGGCATTTTCTAGCCATTGTTTTGGTGGGATTGCTCTATGGATTCTTCATAGCGATAATATGTGGCCAAAGAATCAATGAACGCCACTACCATGTTCTTGCCAAACAAGAATTGACTAAGGAATATGTCGTAGAAGATCGAGAACATGTAAAGAATGTGCCTGAACTTGATCCTAGTCACGTCACAGAGCTAAGGATGTTGGGCCTTTACTAG 816 0.4179 MQLASNGDKEVCSESEPILNHHHLHLQPPEESSFSCEIIPIAPNHDADHDLQNVRVDETCHLVNADQPQCRICLDIGGEDLIAPCHCKGTQKYVHRSCLDYWRSTKEGFAFSHCTECRAVFILRANVPPDRWWLRLKFQFLVARDHAFIFIIVQLVVAFLGVLVYKFYGDELREMFGYEEHPYGFYTMAGIYPLLTRKKFHGHFLAIVLVGLLYGFFIAIICGQRINERHYHVLAKQELTKEYVVEDREHVKNVPELDPSHVTELRMLGLY* 272
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lapu5g00089 271 PANTHER RING/FYVE/PHD ZINC FINGER SUPERFAMILY PROTEIN 207 271 - -
Lapu5g00089 271 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 63 122 IPR013083 -
Lapu5g00089 271 SUPERFAMILY RING/U-box 65 121 - -
Lapu5g00089 271 CDD RING_CH-C4HC3_MARCH 70 118 - -
Lapu5g00089 271 SMART ringv_2 69 118 IPR011016 GO:0008270
Lapu5g00089 271 ProSiteProfiles Zinc finger RING-CH-type profile. 62 124 IPR011016 GO:0008270
Lapu5g00089 271 Pfam RING-variant domain 70 117 IPR011016 GO:0008270
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lapu5g00089 Lapu-Chr5 743071 749042 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lapu5g00089 57 190 C3H Transcription Factor Family AT1G50440 85.821 2.50e-86 255
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lapu5g00089 - - gmx:100808123 527.709