Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lapu5g00078 ATGGCACTCGACACATGCAAACAACTCATGGATCTTTCAATTGAGGAGTTAACAAGGTCCATTGATGAAATAAATGACTTTTCTCTAGTAAGTGTTGACAAAATCCTCATGAATGTAAAAGTTTGGCTCAGTGGCGCAATTACATACCAAGATACTTGCTTGGATGGGTTTGAAAACACCACTAGTGAAGCAGGTAAAAAGATGCAGGATTTATTAATGACAGGCATGCATATGAGTAGCAATGCTCTTGCAATTGCTACAGAATTGGCTGATACTCTTACAAATTTGAATGTCACAAATTTACATGGACATCGTGAACTTCAAGATTCTAACCTTCCCTCATGGGTTGATCATCATGGACTACTCCATGAAAATTCAAGTATATTTAATCTCAAGCCTAATGTGACAGTAGCCAAAGATGGTACTGGAGATTTCAAAAGCATCAACGAGTCATTGCAGCAAGTGCCCGAGAAAAACCGAAAACCATTTGTGATCTACATCAAAGAAGGCATATATCAAGAATATGTTGAAGTTACTAAGAAGATGACTCATGTGGTTTTCATTGGTGATGGTGGAAAAAAGACACGAATAACAGGAAACAAAAACTATATTGATGGAATTAACACTTACAGAACTGCCACTGTTGCTATTCAAGGAGATCACTTTGTGGCCATCAATATGGGGTTTGAGAACTCGCAGGACCTCACAAGCATCGAGCAAGTGGCATTGAGAGTCCAAGCGCATAAGTCAATCTTCTACAATTGCTCAATGGATGGGTATCAAGACACTCTTTACGTACACACCATGCGTCAATTCTATAGGGATTGCACCATTTCGAGCACCATCGACTTTGTGTTTGGAAATGCACTTGCTGTTTTCCAAAATTGCACTTTCGTGGTCAGAAAGCCAATGAAAAACCAACAATGCATTGTGACTGCACAAGGTAGGAAAGAGAAGCAACAACCATCTGGAATCGTAATCCAAGGGGGTTCTATTGTCTCTGACCCTGAGTTTTACTTAGTACGATTTGAGAATAAAGCTTACCTAGCTCGTCCATGGAAGAATTACTCTAGGACTGTTATCATGGACACTTACATTGATGATTTGATTCACCCTGATGGGTATTTACCATGGCAAGGATTAGAAGGCCCTTCTGGTATGGATACCTGCTTTTATGCTGAGTATCACAACACTGGCCCGGGTTCAAACAAATCCAAGCGTGTGAATTGGTTTGGGATTTGGAATCTCAATTCAAAAGCTGCTCATTGGTTCTCACCTTCCAAGTTCTATCATGGAACTGACTGGATTAAGGCTACAGGAATTCCTTGCTTTCCTGGCGTGCCCGCACACCATAGACACAACAAGACGATACATAAGTGGTAA 1383 0.4056 MALDTCKQLMDLSIEELTRSIDEINDFSLVSVDKILMNVKVWLSGAITYQDTCLDGFENTTSEAGKKMQDLLMTGMHMSSNALAIATELADTLTNLNVTNLHGHRELQDSNLPSWVDHHGLLHENSSIFNLKPNVTVAKDGTGDFKSINESLQQVPEKNRKPFVIYIKEGIYQEYVEVTKKMTHVVFIGDGGKKTRITGNKNYIDGINTYRTATVAIQGDHFVAINMGFENSQDLTSIEQVALRVQAHKSIFYNCSMDGYQDTLYVHTMRQFYRDCTISSTIDFVFGNALAVFQNCTFVVRKPMKNQQCIVTAQGRKEKQQPSGIVIQGGSIVSDPEFYLVRFENKAYLARPWKNYSRTVIMDTYIDDLIHPDGYLPWQGLEGPSGMDTCFYAEYHNTGPGSNKSKRVNWFGIWNLNSKAAHWFSPSKFYHGTDWIKATGIPCFPGVPAHHRHNKTIHKW* 461
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lapu5g00078 460 SUPERFAMILY Pectin lyase-like 131 444 IPR011050 -
Lapu5g00078 460 SUPERFAMILY Plant invertase/pectin methylesterase inhibitor 2 89 IPR035513 -
Lapu5g00078 460 Gene3D Invertase/pectin methylesterase inhibitor family protein 1 90 IPR035513 -
Lapu5g00078 460 Gene3D - 128 447 IPR012334 -
Lapu5g00078 460 NCBIfam pectinesterase inhibitor domain 2 89 IPR006501 GO:0004857
Lapu5g00078 460 CDD PMEI-like_3 1 90 - -
Lapu5g00078 460 Pfam Pectinesterase 134 432 IPR000070 GO:0030599|GO:0042545
Lapu5g00078 460 ProSitePatterns Pectinesterase signature 1. 159 178 IPR018040 -
Lapu5g00078 460 PANTHER PECTINESTERASE 1 437 - -
Lapu5g00078 460 Pfam Plant invertase/pectin methylesterase inhibitor 2 85 IPR006501 GO:0004857
Lapu5g00078 460 FunFam Pectinesterase 129 447 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lapu5g00078 Lapu-Chr5 644269 645968 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lapu5g00078 1 449 Carbohydrate Esterase AT3G05610 49.224 5.79e-168 486
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lapu5g00078 K01051 - gmx:100820556 812.372