Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lapu5g00072 ATGGCTGTCACAGGTTCTGGTTCCGGGCAGCCACAATTCATTTCGAGCACTGGCAACCGAAGCTTTTCCAATGCTCCACTCATTGAGAACTCAGATACTAATCAAATTGTTGTGCCTGATAGGAGAAGCTGGAAAAATTTATTTGCCTACATGGGGCCTGGGTTTCTTGTATCCATTGCATACATAGACCCAGGGAATTTTGAGACGGATCTTCAGTCTGGGGCACAGTATAAATATGAGTTACTTTGGATCATATTGGTGGCATCATGTGCTGCTCTTGTAATTCAATCAATGGCAGCCAATCTTGGGGTGGTCACTGGAAAACACTTAGCAGAGCATTGTAGAACTGAATATCCCCGGGTGCCCAACTTCATCCTTTGGATTATTGCTGAAATTGCTATAGTGGCCTGTGACATTCCTGAAGTAATTGGGACAGCCTTTGCGTTGAACATGCTCTTCAACATACCTGTTTGGATTGGTGTTCTTCTGACAGGATTCAGCACATTGATCCTCTTAGCATTACAGCAATATGGGGTTAGGAAACTCGAATTCTTGATTGCATTTCTTGTATTTACAATTGCTGCATGTTTTATGGCTGAGCTTGGATATGCAAAGCCTGATGCTAAAGAAGTTATAAAGGGTCTTTTTGTGCCAGAACTAAAAGGAAGTGGTGCAACTGGTCTTGCAATTTCACTCCTTGGAGCTATGGTTATGCCGCACAATCTCTTCCTGCACTCAGCACTGGTGTTGTCTAGGAAAATACCACGATCAGTTCGGGGAATCAAGGAGGCTTGCAGATTTTACATGATAGAAAGTGCCTTCGCTCTCATGGTGGCCTTCCTCATAAATGTTTCTGTTATTTCTGTAAGTGGTGCTGTTTGCAATTCTTCAAATTTGAATGCAGAAGATCAGATGAGCTGTCAGGATTTGGATCTGAACAAAGCCTCCTTCCTACTTAGAAATGTCTTGGGGAAATGGAGTTCAAAACTGTTTGGAATTGCTTTGCTTGCATCGGGTCAAAGTTCTACTATAACAGGAACATATGCAGGGCAGTATGTCATGCAGGGATTTCTTGATTTACGACTGGAGCCATGGATTCGGAATATGTTAACTCGTTGCTTAGCCATTGTTCCTAGTTTGATTGTTGCAGTAATTGGAGGCTCTGCCGGGGCGGGGAAGCTCATAATCATTGCATCCATGATCTTATCATTTCAACTTCCTTTTGCTTTGGTTCCACTCCTCAAGTTTACAAGCTGCAAAACTAAGATGGGGGCACATGTCAACTCTACCATGATTTCAGCTGTTACATGGATAATCGGTACCCTCATTATGGCCATCAACATATACTACTTGATAACTGGCTTCATCAAGCTGCTTCTTCATAGTCACATAAAAATTGTGGCTAAGGTGTTTCTTGGGATATTAGGATTTTCTGGCATGGCAATATATTTGGCTGGTATAACGTATCTAGTACTCCGCAAAAATACAGAGGCTACACACCTTTTGGCTCTAACAGCACCAGAAAATCAACAAATGACAAATGAACAAGGCAATGGATCAATCTATTCTCTTCCAAGAGAAGACATAGTAAGCATGCAATTGCCTCAAAGAAGTACTCCTGCTGATCTTGACTGA 1635 0.422 MAVTGSGSGQPQFISSTGNRSFSNAPLIENSDTNQIVVPDRRSWKNLFAYMGPGFLVSIAYIDPGNFETDLQSGAQYKYELLWIILVASCAALVIQSMAANLGVVTGKHLAEHCRTEYPRVPNFILWIIAEIAIVACDIPEVIGTAFALNMLFNIPVWIGVLLTGFSTLILLALQQYGVRKLEFLIAFLVFTIAACFMAELGYAKPDAKEVIKGLFVPELKGSGATGLAISLLGAMVMPHNLFLHSALVLSRKIPRSVRGIKEACRFYMIESAFALMVAFLINVSVISVSGAVCNSSNLNAEDQMSCQDLDLNKASFLLRNVLGKWSSKLFGIALLASGQSSTITGTYAGQYVMQGFLDLRLEPWIRNMLTRCLAIVPSLIVAVIGGSAGAGKLIIIASMILSFQLPFALVPLLKFTSCKTKMGAHVNSTMISAVTWIIGTLIMAINIYYLITGFIKLLLHSHIKIVAKVFLGILGFSGMAIYLAGITYLVLRKNTEATHLLALTAPENQQMTNEQGNGSIYSLPREDIVSMQLPQRSTPADLD* 545
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lapu5g00072 544 PRINTS Natural resistance-associated macrophage protein signature 126 152 IPR001046 GO:0016020|GO:0030001|GO:0046873
Lapu5g00072 544 PRINTS Natural resistance-associated macrophage protein signature 367 384 IPR001046 GO:0016020|GO:0030001|GO:0046873
Lapu5g00072 544 PRINTS Natural resistance-associated macrophage protein signature 229 252 IPR001046 GO:0016020|GO:0030001|GO:0046873
Lapu5g00072 544 PRINTS Natural resistance-associated macrophage protein signature 399 418 IPR001046 GO:0016020|GO:0030001|GO:0046873
Lapu5g00072 544 PRINTS Natural resistance-associated macrophage protein signature 154 173 IPR001046 GO:0016020|GO:0030001|GO:0046873
Lapu5g00072 544 PRINTS Natural resistance-associated macrophage protein signature 179 200 IPR001046 GO:0016020|GO:0030001|GO:0046873
Lapu5g00072 544 PRINTS Natural resistance-associated macrophage protein signature 339 358 IPR001046 GO:0016020|GO:0030001|GO:0046873
Lapu5g00072 544 PANTHER SOLUTE CARRIER PROTEIN FAMILY 11 MEMBER 39 499 IPR001046 GO:0016020|GO:0030001|GO:0046873
Lapu5g00072 544 Pfam Natural resistance-associated macrophage protein 67 429 IPR001046 GO:0016020|GO:0030001|GO:0046873
Lapu5g00072 544 NCBIfam metal ion transporter, metal ion (Mn2+/Fe2+) transporter (Nramp) family 46 423 IPR001046 GO:0016020|GO:0030001|GO:0046873
Lapu5g00072 544 NCBIfam Nramp family divalent metal transporter 52 419 - -
Lapu5g00072 544 Hamap Divalent metal cation transporter MntH [mntH]. 39 455 IPR001046 GO:0016020|GO:0030001|GO:0046873
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lapu5g00072 Lapu-Chr5 607367 613723 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lapu5g00072 15 537 Inorganic Solute Cotransporters AT1G15960 80.952 0.0 878
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lapu5g00072 K21398 - gmx:100797298 1018.84