LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Lapu5g00071	ATGGATCGTGGATCCAATGGCACGGGAACGGGCACGGGCAGCAGCAGGAACATTCTGTTCAACAAGTACGAGATAGGGAAGATGCTGGGACAGGGGAACTTCGCCAAAGTGTACCACGGGCGAAACCTGATCACAAACGAGAGCGTGGCTATCAAGGTCATAAAGAAAGAGAGGCTCCAGAAGGAGAGGCTGGTGAAACAGATAAAACGCGAGGTTTCCGTCATGCGCTTGGTGCGTCACCCCCACATCGTGGAGCTCAGAGAGGTTATGGCCAACAAAGCCAAAATCTTCATGGTCGTCGAATACGTCAAAGGTGGGGAACTCTTCGCCAAGGTGGCCAAGGGAAAGATGAAGGAAGACATCGCCAGAAAGTACTTTCAACAGCTCATCAGCGCCATCGACTTCTGCCACAGCCGCGGCGTCACCCACCGTGATTTGAAGCCAGAGAACCTTCTCCTCGACGAGAACGAAGACCTCAAAGTCTCAGACTTCGGCTTGTCGGCACTGCCGGACCAGCGCAGATCCGACGGGATGCTTTTGACGCCGTGCGGCACGCCGGCCTACGTGGCGCCGGAGGTTCTGAAAAAGAAGGGTTACGATGGGTCCAAGGCTGATATATGGTCGTGTGGGGTGATCCTCTTCGCTCTTCTTTCTGGGTATTTACCCTTTCAGGGTGAGAATGTGATGAAGATTTACAGCAAGTCTTTCAAAGCTGATTATGCATTCCCGGAATGGATTTCCCCTGGGGCCAAACGCTTGATCTCTAATTTACTGGTTGTGGACCCACAGAAGAGGTTTTCCATCCCTGACATCATGAAGGATCCTTGGTTCCAAGTTGGGTTCATGCGGCCCATTGCGTTTTCCATGAAGGAGACAGCTCTGGAGGATAACATTGACTTCAACGGGGATGATGCTGCTAGTAGCGGAAACATTAGTGGTAGCGATGATGGTAACAGCAGCAGCAACAACAATGCTGAGGAGCTGGTCGGGGCCAAGCCGGCTCGTCCGTCTTACAATGCTTTTGAGATAATATCGTCGTTGTCGCACGGGTTTGATCTGAGGAATTTGTTCGAGACGAGGAAACGGTCGCCGTCGATGTTCATATCGAAGCACTCGGCCTCGGCAGTGATGGCGAAGATGGAGGCCGTGGCGAAGAAGCTGAACTTTAGGGTGACGGCGAAGAAGGAGTCCATGGTGAGGATGCAGGGAGCGACTGAAGGGAGGAAGGGGAAGCTGGGGATGACGGTGGAAGTGTTCGAGGTGGCGCCGGAGGTGGCGGTGGTGGAGTTCTCGAAGTCAGCAGGAGACACGCTAGAATACATAAAACTGTGCGAGGAGGAAGTTAGGCCTTCGCTCAAAGACATTGTCTGGACTTGGCAAGGGGACTGCAACTCCCACCAGTGA	1404	0.5335	MDRGSNGTGTGTGSSRNILFNKYEIGKMLGQGNFAKVYHGRNLITNESVAIKVIKKERLQKERLVKQIKREVSVMRLVRHPHIVELREVMANKAKIFMVVEYVKGGELFAKVAKGKMKEDIARKYFQQLISAIDFCHSRGVTHRDLKPENLLLDENEDLKVSDFGLSALPDQRRSDGMLLTPCGTPAYVAPEVLKKKGYDGSKADIWSCGVILFALLSGYLPFQGENVMKIYSKSFKADYAFPEWISPGAKRLISNLLVVDPQKRFSIPDIMKDPWFQVGFMRPIAFSMKETALEDNIDFNGDDAASSGNISGSDDGNSSSNNNAEELVGAKPARPSYNAFEIISSLSHGFDLRNLFETRKRSPSMFISKHSASAVMAKMEAVAKKLNFRVTAKKESMVRMQGATEGRKGKLGMTVEVFEVAPEVAVVEFSKSAGDTLEYIKLCEEEVRPSLKDIVWTWQGDCNSHQ*	468

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Lapu5g00071	467	MobiDBLite	consensus disorder prediction	305	327	-	-
	Lapu5g00071	467	SMART	serkin_6	23	277	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Lapu5g00071	467	ProSiteProfiles	Protein kinase domain profile.	23	277	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Lapu5g00071	467	Pfam	NAF domain	337	392	IPR004041	GO:0007165
	Lapu5g00071	467	FunFam	Non-specific serine/threonine protein kinase	334	457	-	-
	Lapu5g00071	467	Pfam	Protein kinase domain	23	277	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Lapu5g00071	467	ProSitePatterns	Protein kinases ATP-binding region signature.	29	56	IPR017441	GO:0005524
	Lapu5g00071	467	ProSitePatterns	Serine/Threonine protein kinases active-site signature.	141	153	IPR008271	GO:0004672\|GO:0006468
	Lapu5g00071	467	PANTHER	CALCIUM/CALMODULIN-DEPENDENT PROTEIN KINASE KINASE-RELATED	14	453	-	-
	Lapu5g00071	467	Coils	Coil	51	71	-	-
	Lapu5g00071	467	FunFam	Non-specific serine/threonine protein kinase	14	102	-	-
	Lapu5g00071	467	SUPERFAMILY	Protein kinase-like (PK-like)	19	278	IPR011009	-
	Lapu5g00071	467	Gene3D	Kinase associated domain 1, KA1	334	458	-	-
	Lapu5g00071	467	MobiDBLite	consensus disorder prediction	305	328	-	-
	Lapu5g00071	467	FunFam	Non-specific serine/threonine protein kinase	16	323	-	-
	Lapu5g00071	467	Gene3D	Transferase(Phosphotransferase) domain 1	14	332	-	-
	Lapu5g00071	467	CDD	CIPK_C	339	453	-	-
	Lapu5g00071	467	ProSiteProfiles	NAF domain profile.	333	358	IPR018451	GO:0007165

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Lapu5g00071	Lapu-Chr5	599379	601463	Wgd

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Lapu5g00071	16	465	CBL-interacting serine-threonine protein kinases	AT5G10930	59.735	0.0	560

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	PK	CAMK_CAMKL-CHK1	Lapu5g00071		Pkinase	3.5e-75	CL0016

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Lapu5g00071	-		-	gmx:100804244	775.778