Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lapu5g00070 ATGGATTGTTCATCGTGGATTAACACTTCCTTGGATCTCAATATTAATCCTTGCAGGCTTCATGAAGAACTTCCCAAAAAGGAGGTGGAGAGCAATTTTTTCTCTTTGGGGCTCAAGAAATCTTCTGTAAAAGAACAGTCTTCTGGTGCCTTGGTGGAGGAGCTGAAGCGGGTGAGTGCAGAAAACAAGAAGTTGACCGAAATGCTCACGGAGATGTGTGAGAACTACAACGCTTTGCGAAGCAATTTGATGGAATATATGAGGAAGAATCCTGATAAGGAGCTCAACTCATCGAAGAAAAGGAAGTCTGAAAGCAGCAACAACAATAGTACTCCAATGGGCGTCAACGGAAACTCTGAAAGCAGCTCAACCGATGAAGAATCATGCAAGAAACCAAAGGAAGACATCAAGACAACAGTTTCAAGAGTTTTCGTGAGGACAGAAGCAAATGATACAACCCTGATTAGTTTGACAGGCTTTTCATTTTTTTCGTGTTTCCAGATTGTGAAAGATGGATATCAGTGGAGGAAATATGGACAAAAGGTGACCAGGGATAACCCTTCTCCAAGAGCTTACTTCAAGTGCTCTTTTGCTCCAAGCTGCCCGGTAAAAAAGAAGGTGCAAAGAAGTGTGGATGATCAATCTGTTCTGGTTGCAACTTATGAAGGAGAGCACAATCATCCCCACCCTTCTCGAATGGAGGTAACAACCGGCTCCAACCGTGGTATGACGCTAGGTTCAGTACCATGTTCAGGGTCTCTTAGCTCTTCTGCACCAACAGTTACCCTTGACTGGACAAAATCCAAGTCCAGCAGCGATTCAAAGAATATAACTCCCAAAATCGATACACCAGAAGTTCCTCAGGTTTTGGTAGAACAGATGGCCACTTCCTTGACCAAGGATCCTAATTTCAGAGCAGCACTAGTTGCCGCAATCTCAGGAAAAATGTTATTGGGACATATTCCTCAATTTAGGCAATCCTTTTAG 987 0.4336 MDCSSWINTSLDLNINPCRLHEELPKKEVESNFFSLGLKKSSVKEQSSGALVEELKRVSAENKKLTEMLTEMCENYNALRSNLMEYMRKNPDKELNSSKKRKSESSNNNSTPMGVNGNSESSSTDEESCKKPKEDIKTTVSRVFVRTEANDTTLISLTGFSFFSCFQIVKDGYQWRKYGQKVTRDNPSPRAYFKCSFAPSCPVKKKVQRSVDDQSVLVATYEGEHNHPHPSRMEVTTGSNRGMTLGSVPCSGSLSSSAPTVTLDWTKSKSSSDSKNITPKIDTPEVPQVLVEQMATSLTKDPNFRAALVAAISGKMLLGHIPQFRQSF* 329
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lapu5g00070 328 SMART WRKY_cls 169 229 IPR003657 GO:0003700|GO:0006355|GO:0043565
Lapu5g00070 328 Pfam WRKY DNA -binding domain 170 228 IPR003657 GO:0003700|GO:0006355|GO:0043565
Lapu5g00070 328 PANTHER WRKY TRANSCRIPTION FACTOR 36-RELATED 39 316 IPR044810 GO:0003700
Lapu5g00070 328 MobiDBLite consensus disorder prediction 102 123 - -
Lapu5g00070 328 ProSiteProfiles WRKY domain profile. 164 230 IPR003657 GO:0003700|GO:0006355|GO:0043565
Lapu5g00070 328 SUPERFAMILY WRKY DNA-binding domain 166 230 IPR036576 GO:0003700|GO:0006355|GO:0043565
Lapu5g00070 328 Coils Coil 55 89 - -
Lapu5g00070 328 MobiDBLite consensus disorder prediction 92 133 - -
Lapu5g00070 328 Gene3D WRKY domain 159 231 IPR036576 GO:0003700|GO:0006355|GO:0043565
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lapu5g00070 Lapu-Chr5 586850 588987 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lapu5g00070 4 316 WRKY Transcription Factor Family AT1G80840 51.692 2.26e-98 291
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF WRKY Lapu5g00070 WRKY 2.3e-23 CL0274
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lapu5g00070 - - gmx:732588 488.804