Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lapu5g00067 ATGTGGAGTTCAACTTCAAGCACAGCGATTGCAGCAGCCTCCTCCGACGAGGATCCCAGCGAATCCTCCTCGTCTTCCTTCTCCACCTCTCTCTTCAATTTCTCTTCCGGAAACCCTAGAATCGAGGAGACCCGTGGCCTCATGCATCTCTTCCCCGACGACGTTCCTGCTACTCTTCCCGTTGGACGCAAACCTCTAGTTTGCGTTGTCGGCGTCCCCAATCACATGACCTATGCGGATTTCTGTCAGTTCTCTGGTTCCTTCATTCAGCACATGCTAGAGATGCGCATTGTTAGGATGGATGGTATGGAGGATCAGTACAGTGTCTTGATTCGCTTTGACCACCAAGACTCCACCGACAGCTTCTACAAGCACTACAATGGCCGCCGGTTCTCCTCTCTCGAGGTTGAGGTTTGCCGAGTTCTTTTCACGTTAGACGTGCAGTACACTGGTTCCATTGAACATGCACAACCCTCAAATGTTGGTTCAACTGAACAGCCTACATGTCCTGTTTGTCTTGAGCGATTAGATCAGGACACCAGTGGAATTCTTACAACTATATGCAACCATTCTTTCCATTGTTCTTGTATTTCAAAATGGGCAGATTCTTCTTGTCCTGTATGCCGCTATTGCCAGCAGCAAGCTGAAAAATCGATATGTTTTGTTTGTCAAACCACTGAGAACCTGTGGATATGCGTGATATGTGGGTATGTTGGCTGCGGAAGATACAAGGGAGGGCATGCTATAATACACTGGAAAGAGACACAACATTGCTATTCCCTAGAAGTGGAAACCAAACGTGTGTGGGATTATGTGGGAGACAACTATGTTCATAGACTTATTCAGTCCAAAACTGATGGTAAATTGGTTGAGCTGAACACTCACTGTGCACACGCAGACAGTGGATGCGGAAGTTGCAGCTGTGAAGATAATGCCATGAGTGAGGCTATACTTAATAGTAAAGTTGAAGCTATTGTCAATGAATACAATGAATTGCTTGCTACTCAACTCGAAAACCAAAAAATATATTTTGAATCCTTATTACAAGAAGTAAAAGAAGAATATGAAAGAAAAATTTCAAAAGCTGTTCAGAAGGCTATCATTCTTAAACAACAGAAGGTTCAGTCCAAGATTGACAGATGTAAGAAAGAGAAGAAATTTCTGGATGATCTTAATGAGAATCTTCTGAAAAATGAGGACATTTGGAAAGCAAAGATACTTGAGATTGAAGAGAGGGAGAGAAAAGGTACCAGACTGATGGAAGATAGAGTAGCGGACCTGGAAAAGCAGCTTGGAGATCTCATGGTATGTCTTGAGGGAGGGAAGATGGTAGAAGAACTACCCATTTCAGATGATGAGATTAAAGAAGGGACCGTCTTTCACAAATCGAAAGAATCATCCTCAGTTAGTGCTTCTCAGCTGGAAAGAGAATAG 1434 0.4358 MWSSTSSTAIAAASSDEDPSESSSSSFSTSLFNFSSGNPRIEETRGLMHLFPDDVPATLPVGRKPLVCVVGVPNHMTYADFCQFSGSFIQHMLEMRIVRMDGMEDQYSVLIRFDHQDSTDSFYKHYNGRRFSSLEVEVCRVLFTLDVQYTGSIEHAQPSNVGSTEQPTCPVCLERLDQDTSGILTTICNHSFHCSCISKWADSSCPVCRYCQQQAEKSICFVCQTTENLWICVICGYVGCGRYKGGHAIIHWKETQHCYSLEVETKRVWDYVGDNYVHRLIQSKTDGKLVELNTHCAHADSGCGSCSCEDNAMSEAILNSKVEAIVNEYNELLATQLENQKIYFESLLQEVKEEYERKISKAVQKAIILKQQKVQSKIDRCKKEKKFLDDLNENLLKNEDIWKAKILEIEERERKGTRLMEDRVADLEKQLGDLMVCLEGGKMVEELPISDDEIKEGTVFHKSKESSSVSASQLERE* 478
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lapu5g00067 477 Pfam Ring finger domain 168 209 IPR001841 -
Lapu5g00067 477 MobiDBLite consensus disorder prediction 463 477 - -
Lapu5g00067 477 MobiDBLite consensus disorder prediction 1 27 - -
Lapu5g00067 477 CDD RRM_BRAP2_like 67 148 - -
Lapu5g00067 477 SMART Zf_UBP_1 219 268 IPR001607 GO:0008270
Lapu5g00067 477 ProSiteProfiles Zinc finger RING-type profile. 169 209 IPR001841 -
Lapu5g00067 477 CDD RING-H2_BRAP2 167 210 IPR047243 -
Lapu5g00067 477 ProSiteProfiles Zinc finger UBP-type profile. 203 296 IPR001607 GO:0008270
Lapu5g00067 477 Coils Coil 378 398 - -
Lapu5g00067 477 Pfam Zn-finger in ubiquitin-hydrolases and other protein 220 279 IPR001607 GO:0008270
Lapu5g00067 477 SMART ring_2 169 208 IPR001841 -
Lapu5g00067 477 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 212 291 IPR013083 -
Lapu5g00067 477 Pfam BRCA1-associated protein 2 60 156 IPR011422 -
Lapu5g00067 477 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 152 211 IPR013083 -
Lapu5g00067 477 PANTHER BRCA1-ASSOCIATED PROTEIN 9 469 - -
Lapu5g00067 477 Coils Coil 334 372 - -
Lapu5g00067 477 SUPERFAMILY RING/U-box 185 284 - -
Lapu5g00067 477 MobiDBLite consensus disorder prediction 458 477 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lapu5g00067 Lapu-Chr5 568056 570976 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lapu5g00067 162 209 C3H Transcription Factor Family AT1G72220 48.000 1.02e-07 52.4
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lapu5g00067 K10632 - gmx:100794688 832.787