Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lapu5g00066 ATGGAGGATGAGGTGGCGAACGAATGTTTGTGCCACACGAACCCCTTTGATGAAGAGTTCCTACGAGAAATTCTGCAGCAGCCAGAAGAGGGCCTTGTTTCCGCTCCAGATCTTAATACTTTTGGTGAGACAAGCTGTGTGGTAAGGCCAGGTGGTGGTGGCAACTTCATGATGAAGAACGGTAACTCATCCACCATGAATCTATGTGGTGAAGACATGAACAAGCCAACCTCATCTCCAACCGCTTATATACTGTCTTTTGACAAATCCGCTGATCCTCATTCTTTCTCTGCTTGGAAAGATGTCTCCCACAACTTGCCTTTGTCCTCATCAAGGACCAACCAGGGAACAAAGAAGACTCGAAGCGCTTCTGAATCAATGGATCACATTATATCAGAGAGAAATAGGAGACAGGAGCTAACCAGGAAATTCATAGCACTTGCTTCCACCATCCCTGGCTTGAAGAAGATGGAGAAGGCACATGTACTAAGAGAAGCAATCAATTACGTGAAGCAACTGCAAGAGCGTGTAGAAGTGCTAGAAGAAGATATCCAGAAAAACGGTGTGGAATCAGCGATAACCATAACAAGATCACATGTCTGCATTGATGACAGCAACAGTGATGAATGGTATGTGTCCAATGAAGCAGTTCCTGCTGAAGTTGAAGCCAGAGTCTTAGGGAAGCAAGTGTTGATCAAAATTCATTGCGGCAAACAAAAGGGAATTCTGCTTAAAATAATGTCTCAGCTTGAACGTCTTCATCTCTACATATCCACTAGCAATGTCTTGCCACTAGGAAATACCATTGACGTCACCATCATTGCTCAGATGGGTGATAAATACAACATGGTAGTGAAGGACCTAGTGAAAGAGCTGAGACGAGTGGCTACGATGAAGTCATGTGTGTCACAATGA 915 0.4426 MEDEVANECLCHTNPFDEEFLREILQQPEEGLVSAPDLNTFGETSCVVRPGGGGNFMMKNGNSSTMNLCGEDMNKPTSSPTAYILSFDKSADPHSFSAWKDVSHNLPLSSSRTNQGTKKTRSASESMDHIISERNRRQELTRKFIALASTIPGLKKMEKAHVLREAINYVKQLQERVEVLEEDIQKNGVESAITITRSHVCIDDSNSDEWYVSNEAVPAEVEARVLGKQVLIKIHCGKQKGILLKIMSQLERLHLYISTSNVLPLGNTIDVTIIAQMGDKYNMVVKDLVKELRRVATMKSCVSQ* 305
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lapu5g00066 304 Gene3D - 114 188 IPR036638 GO:0046983
Lapu5g00066 304 Coils Coil 163 190 - -
Lapu5g00066 304 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 128 191 IPR036638 GO:0046983
Lapu5g00066 304 MobiDBLite consensus disorder prediction 107 127 - -
Lapu5g00066 304 Pfam Helix-loop-helix DNA-binding domain 129 174 IPR011598 GO:0046983
Lapu5g00066 304 SMART finulus 130 179 IPR011598 GO:0046983
Lapu5g00066 304 MobiDBLite consensus disorder prediction 107 121 - -
Lapu5g00066 304 PANTHER BHLH TRANSCRIPTION FACTOR 72 296 - -
Lapu5g00066 304 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 124 173 IPR011598 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lapu5g00066 Lapu-Chr5 561975 565469 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lapu5g00066 115 293 Basic Helix-Loop-Helix Transcription Factor Gene Family AT4G37850 45.213 9.48e-46 155
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Lapu5g00066 HLH 3e-09 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lapu5g00066 - - vum:124843254 505.753