Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lapu5g00065 ATGGTCCTGCTGGTGAAGATGAAAATAGAAGCGACTTCTGCTGGTGTCTGCTCTGTGATGGAGCAAGCATGGGAGAATTGGTGTCTTGAAATGGAAAAGGATGATGAAGAGGATGATAGGCACAGGGATCTGATGGTGGAAGAGGAGGAGTTCCTGAGGGACATACTCAGAGAACGGGCTTTTTCTTCTGAAACTGAAAGTGAAAGTGAGCACAAGTCAACAAACATGGCTGCCAAAACCCCTAATCTCTCTGATTCCTCTCCCAGGACATATATTCTGTCTTTCGATAGCTCTACCATTATACCAACTGCCACCCCTCACCCTCCACAACCCTCCTCCAAACAACAACCTATTACACCTCCAAAGAGGGGCAGAAACGCTTCCCTCGACCACATCATGGCCGAAAGGAAAAGGAGACAGCAACTCTCCCAGAGCTTCATAGCACTTTCAGCCACTATCCCTGGCCTCAAGAAGACGGACAAGAGTTCAATACTCGGGGAAGCGATTAATTACGTGAAAGAGCTTCAAGGACGTGTGAGGGAGCTTGAAGAGAGAAACAAGAGAGGGAAATCAGAAGCAGTGATGAAGAAGAAGAAGAAGAAGAAGAAGAAGAGTGATGTGTGTGGAAAGGAAGATAGTAACTCAAGTGAAACAGAATCGAAAGATTGGTGCAGAAGGCTCCCTGACATTGAAGCGAGAGTGATGGAGAACGAGGTACTGATTGAGATCCATTGCGAGAAGGAAGAAGGGGTTGAGCTCAATTTATTGAACCACCTTGAAAAACTTCATCTCTCTGTCACCGCCACCAGCGTCTTGCCCTTTGGGAATTCAACTCTTGGCATTACTATTATCGCTCAGATGGGTGACGCCTTCAACATGACACTGAACGAGGTAGTAAAAAACCTAAGGAAACTGCTGTTGAATCACGTCGACAACATTATTCATAGCGATCCGTACTAG 960 0.4625 MVLLVKMKIEATSAGVCSVMEQAWENWCLEMEKDDEEDDRHRDLMVEEEEFLRDILRERAFSSETESESEHKSTNMAAKTPNLSDSSPRTYILSFDSSTIIPTATPHPPQPSSKQQPITPPKRGRNASLDHIMAERKRRQQLSQSFIALSATIPGLKKTDKSSILGEAINYVKELQGRVRELEERNKRGKSEAVMKKKKKKKKKSDVCGKEDSNSSETESKDWCRRLPDIEARVMENEVLIEIHCEKEEGVELNLLNHLEKLHLSVTATSVLPFGNSTLGITIIAQMGDAFNMTLNEVVKNLRKLLLNHVDNIIHSDPY* 320
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lapu5g00065 319 MobiDBLite consensus disorder prediction 74 103 - -
Lapu5g00065 319 Coils Coil 165 192 - -
Lapu5g00065 319 MobiDBLite consensus disorder prediction 183 221 - -
Lapu5g00065 319 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 126 175 IPR011598 GO:0046983
Lapu5g00065 319 PANTHER BHLH TRANSCRIPTION FACTOR 39 307 - -
Lapu5g00065 319 Pfam Helix-loop-helix DNA-binding domain 131 176 IPR011598 GO:0046983
Lapu5g00065 319 MobiDBLite consensus disorder prediction 58 73 - -
Lapu5g00065 319 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 130 191 IPR036638 GO:0046983
Lapu5g00065 319 MobiDBLite consensus disorder prediction 205 221 - -
Lapu5g00065 319 Gene3D - 121 192 IPR036638 GO:0046983
Lapu5g00065 319 SMART finulus 132 181 IPR011598 GO:0046983
Lapu5g00065 319 MobiDBLite consensus disorder prediction 58 126 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lapu5g00065 Lapu-Chr5 555648 557541 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lapu5g00065 120 310 Basic Helix-Loop-Helix Transcription Factor Gene Family AT4G37850 46.597 4.50e-44 152
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Lapu5g00065 HLH 1e-09 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lapu5g00065 - - pvu:PHAVU_005G181300g 337.035