Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lapu5g00063 ATGAATCTTCTTGTTCTCTTCCTACCTATTTGGGTGCTGAGCATTTCTCTTTCCTCGACAATTCTTCATGCTGCATCCTCCATTTCTTTTTCTCAAAATGCACAAGCTGAATCTCCAGGTATTCAGGAGGTTAGAACAGTGCACCACCAGAATTTGAATAAAAGAATTCTAATTGTATTACTTGCTTGTTCTGGTCTTCTCGGTGGAGTCTTCCTAATCATATTTTATGTCTGGTTCCGTCGACATAAAATCTTAAAACGCTCCCGAAGTAAAAGCCAAGAAACCAATGAGACTGCAAAAGGGGAAACCTTAAGCTCGGTTAATGCTAAACTTAACTACTCTAGGATGGCAGATAAGAAGAGTTCAGTTGCTATTTTTGACTATCAGCTTTTAGAGGCTGCCACAAACAGCTTTAGCACAAGCAATATTATGAGAGAGAGTGGTTCTAGAATCATTTACAGAGCTAATTTTGATGAGCATTTTCAGGCAGCTGTGAAGAAAGCAGATAGTGATGCTGATAGAGAATTTGAGAATGAAGTGAGTTGGTTGAGCAAGATGCGCCATCAGAATATCATCAAACTTATGGGTTATTGTATTCATGGTCAATCGAGGTTTCTTGTTTATGAATTGATTGAGAATGGGTCTCTGGAAACTCAATTGCATGGGCCTAATCGAGGGTCATCTTTAACCTGGTATCTCAGGTTAAGAATTGCTGTTGATGTTGCAAGAGCACTAGAATATCTCCATGAGCATTCCAATCCTCCTGTGGTTCATAGAGACTTAAAATCTTCTAATGTTCTTCTGGATTCTAACTTTAATGCCAAGTTATCAGATTTTGGATTTGCTATGGTTTCTGGAATGCAACACAAGAACATGAAGATGTCAGGAACTTTAGGATATGTGGCCCCTGAGTACATATCCCATGGTAAACTAACTGACAAGAGCGATGTCTATGCTTTTGGGGTTGTCCTTCTAGAACTCCTAACCGGAAGAAAACCCATGGAGAACATGACCTCAAACCAATATCAATCCCTTGTATCATGGGCCATGCCTCAGCTAACTGACAGATCGAAGCTTCCAAGTATTCTTGATCCTGTTATCAGAGACACAATGGATTTGAAGCATTTATATCAGGTTGCTGCAGTGGCTGTACTCTGCGTGCAAGCAGAACCAAGTTATAGGCCACTTATAACAGACGTGTTGCACTCTCTCATCCCTTTGGTACCCCTTGAACTTGGAGGGTCACTAAGAGTTACAGAACCAATCAGCTCAGAGAACTCTCATTGA 1287 0.4056 MNLLVLFLPIWVLSISLSSTILHAASSISFSQNAQAESPGIQEVRTVHHQNLNKRILIVLLACSGLLGGVFLIIFYVWFRRHKILKRSRSKSQETNETAKGETLSSVNAKLNYSRMADKKSSVAIFDYQLLEAATNSFSTSNIMRESGSRIIYRANFDEHFQAAVKKADSDADREFENEVSWLSKMRHQNIIKLMGYCIHGQSRFLVYELIENGSLETQLHGPNRGSSLTWYLRLRIAVDVARALEYLHEHSNPPVVHRDLKSSNVLLDSNFNAKLSDFGFAMVSGMQHKNMKMSGTLGYVAPEYISHGKLTDKSDVYAFGVVLLELLTGRKPMENMTSNQYQSLVSWAMPQLTDRSKLPSILDPVIRDTMDLKHLYQVAAVAVLCVQAEPSYRPLITDVLHSLIPLVPLELGGSLRVTEPISSENSH* 429
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lapu5g00063 428 PANTHER OS01G0750732 PROTEIN 29 407 - -
Lapu5g00063 428 ProSitePatterns Serine/Threonine protein kinases active-site signature. 256 268 IPR008271 GO:0004672|GO:0006468
Lapu5g00063 428 Gene3D Transferase(Phosphotransferase) domain 1 211 409 - -
Lapu5g00063 428 SMART serkin_6 138 405 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lapu5g00063 428 Gene3D Phosphorylase Kinase; domain 1 95 210 - -
Lapu5g00063 428 Pfam Protein tyrosine and serine/threonine kinase 158 361 IPR001245 GO:0004672|GO:0006468
Lapu5g00063 428 FunFam probable receptor-like protein kinase At1g80640 211 409 - -
Lapu5g00063 428 SUPERFAMILY Protein kinase-like (PK-like) 114 404 IPR011009 -
Lapu5g00063 428 ProSiteProfiles Protein kinase domain profile. 138 405 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lapu5g00063 Lapu-Chr5 534187 537601 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lapu5g00063 1 350 Receptor kinase-like Gene Family AT1G80640 45.799 1.10e-105 315
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_RLCK-X Lapu5g00063 PK_Tyr_Ser-Thr 2.8e-43 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lapu5g00063 - - gmx:100811188 768.074