Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lapu5g00058 ATGGATCTTATGTGGTCAGGGCCACCTCCATCATCTGAAAATGATCTGAACATTCCATTTTCAGAGAATCCTCCACCTTGCTCAAAGCCAGTGCTACCTTCCATCGATATCCAAAAGGAGAAGAAGGAGGACAAAGAACATCCCTATGAGTCAGCTCCAGCACACCTTGCACTTGATTCAGGTGATGAGTCAAAGCCAGAACTCAACCTCATCAACTGTATTGATACAAATTTGTCCATGAACTCCTCGGAATCCAGTCATGGAGGAGGATTCGGTGATGAATTGGAGCCCAGGATATTCTCATGCAACTACTGCCAAAGGAAGTTTTATAGTTCGCAGGCCCTTGGGGGACACCAGAATGCACATAAGCGTGAAAGAACTCTGGCAAAAAGAGGACACAAGACTGGTGCTGCAGTTCCCATAGATTTTGCACACAGGTACTCCAGCATGGCTTCTCTGCCTTTGCATGGCTCCTATAATAGGTCACTTGGAATTCAGGCGCATTCTATGATCAACAAACGCTCTTTTCAAACACAAACACCCTGCTTTGGTTTGTCCCATTCTCATGCTCAAGACGGCTGGCAAAAGCTGCCTTTGTACTCACAACAGGCAACTGGGGCAGAAACTGAATCACCCTTGGCTGGTGGTATCCAACGGCTAGGGAAGTTTTCTCCAAGGCTGGTGCCAGAGGGATTTGGAGGCTACTGGTTGGATAGTATTAACCATTTGAAGACTAAAAAAGAGGAGTTGCACAAGCTTGACTTGTCCCTCAAACTCTAA 780 0.4641 MDLMWSGPPPSSENDLNIPFSENPPPCSKPVLPSIDIQKEKKEDKEHPYESAPAHLALDSGDESKPELNLINCIDTNLSMNSSESSHGGGFGDELEPRIFSCNYCQRKFYSSQALGGHQNAHKRERTLAKRGHKTGAAVPIDFAHRYSSMASLPLHGSYNRSLGIQAHSMINKRSFQTQTPCFGLSHSHAQDGWQKLPLYSQQATGAETESPLAGGIQRLGKFSPRLVPEGFGGYWLDSINHLKTKKEELHKLDLSLKL* 260
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lapu5g00058 259 ProSiteProfiles Zinc finger C2H2 type domain profile. 100 127 IPR013087 -
Lapu5g00058 259 MobiDBLite consensus disorder prediction 35 50 - -
Lapu5g00058 259 SUPERFAMILY beta-beta-alpha zinc fingers 97 127 IPR036236 -
Lapu5g00058 259 FunFam Zinc finger protein 2 77 146 - -
Lapu5g00058 259 PANTHER C2H2 AND C2HC ZINC FINGERS SUPERFAMILY PROTEIN 38 259 IPR044246 GO:0009788
Lapu5g00058 259 ProSitePatterns Zinc finger C2H2 type domain signature. 102 122 IPR013087 -
Lapu5g00058 259 MobiDBLite consensus disorder prediction 1 50 - -
Lapu5g00058 259 Gene3D Classic Zinc Finger 87 143 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lapu5g00058 Lapu-Chr5 507748 508527 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lapu5g00058 6 259 C2H2 Transcription Factor Family AT5G10970 38.246 4.93e-41 140
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Lapu5g00058 None None None
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lapu5g00058 - - vun:114185863 421.779