Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lapu5g00016 ATGTTTATTACGTTAAAGATCACGAAGATTCATTGCACTCTCATCCTGACTTGCTTTTTTTTTCCTGGTTTACAGGTTTGGGATGGAGAGAGGTTCTCTGACTGCTTTGAAGACATTGTTTTAGGTTTTGCAGTTAACATAGTAACTGTTGTTATGGTTGTTGTGCTTGCATTTAGACAGAAGATTGTTGGAGGAGTTCGGAGGTCAGATGGCCAGAGGACCCTTCCAGAAAAAGTTGTCCTGGATTTTATACCAGCTGTTGGAGCATGTCTTTCAATTGTAGACATATTTTTTCTGTGGAAGAAAGAGCATAGTAGTCACTTTGTTGGATATCATAAATGGTTATGTAGCTGTTCTGAGTTGATGGTGTGGATAAATATAATTTTCTTCACAAAGCGTGCCTGCAGTCGTCACATTGTCTTCAATCGTGTCTTTTGTTTCTGGTGGATTCCGAAAGCAATATTGGCAGTTTTATATTTGATGACAAAGATTTCATCATTGAAGGTTTCAATATGCATCACGGAAAGCTTAGTTGTTCTCTTGAATATCTCATTTGGCTTAGCCATCAATGTGATCAGGATAAAGAGACCATCTTACAAAAGCAGTTTATTATTGGAAGATCCACTTCTTTCGAATGGCGTGGACCTTGAGGAAGGTGGTTATCATGACCTTGGAAATGATGGAAACTTTTGGGATTTGATGACTTTCAAATTCATAACTCCAGTAATGAATCATGGTGTGGTAAAACAATTAGACTCTGATGACCTATTGCCACTACCTACTGATATGGATCCTTCTTCCTGTCATGATGTGATCTTATCCTGCTGGCAAGCTCAACTGAGTAACAATGGTTCAAAGCCATCTTTGTTTAGAGCACTTTGTAGTGCATATGGATGGCCATATCTCCGCCTGGGTTTATTGAAGGTGACTAATGATTGTATTGGTTTTGCGGGACCGTTGCTTCTCAATAAGCTGATCCAGTTTCTTCAACAAGGTTCAGTGAATTTGGATGGGTATTTACTTGCATTATCCTTGGGGCTTACCTCTATAATTAAATCCTTTTTAGATACACAATATACTTTTCATCTTTCCAAACTGAAGCTGAAGCTGCGATCTAGTATCATGACTCTAATCTATGAGAAGTGTCTGCGTGTGAACTTAGCAGAGCGTTCAAAGTTTACAAATGGAGAAATTCAGACATTTATGTCAGTGGATGCTGACCGAACTGTCAACTTGTGTAATAGTTTCCATGATATGTGGAGCCTGCCTCTACAAATTGGAGTGGCTCTCTATCTTTTGTATACTCAAGTCAAATTTGCATTTGTATCTGGATTAGCAATAACCATTTTATTGATACCAGTGAATAAATGGATATCACAATTGATTGCAACTGCAACTCAGCAGATGATGAAGGAGAAAGATGAAAGGATTCGTAGGACAGGAGAACTTTTGACTTATATTCGCACTTTGAAGATGTATGGATGGGAAATTCTTTTTTCTAGTTGGTTGATGGTTACAAGATCTAAGGAAGTCAAACACTTAGCTACTCGAAAGTACTTGGACGCATGGTGTGTTTTCTTTTGGGCTACAACACCAACACTCTTTTCTCTTTTCACATTTGGACTCTATGCACTGATGGGACATCAACTTGATGCTGCAATGGTTTTCACTTGTCTTGCTTTGTTCAACACCCTTATTTCACCACTAAATTCATTTCCTTGGGTAATTAATGGATTGATTGATGCCATCATATCCTCCAGACGGTTGAGTAGGTTTCTTGCTTGTCCTGAACATAAATTTAAAGTGGGAGACACTAGTTCTTGTCCATCATCATTCCTAAGTGAACAGCCTGATTCTGTACAAGGTTTGGGTGTATGTATCCAGGATGCATGCTGTACTTGGTCAAACAGTGAGGAACAAACATTAAATTTGGTGTTGAATCATGTGACTCTAAGTGTGTCCCAGGGTTCCTTTGTTGCAGTTATTGGAGAGGTTGGTTCGGGTAAATCATCCCTGTTATATTCAATTCTTGGAGAAATGCAGCTTGTTCGTGGCTCTATTTATTCCAATGAATCCATTGCTTATGTACCACAGGTCCCTTGGATTTTATCTGGAACAGTACGTGACAACATATTATTTGGGAAAAGCTATGATCCCGAAAGGTATACTGATACACTGAAGGCATGTGCATTAGATGTTGATGTCTCATTGATGATTGGAGGTGACATGGCTTATATTGGAGAGAAAGGAGTCAACTTATCGGGTGGACAGAGAGCTCGTCTTGCTTTGGCGAGGGCATTGTATAATGACTCAGCTGTTGTTATGCTTGACGATGTCCTGAGTGCAGTAGATGTACAAGTTGCTCAATGTATCTTATACAATGCCATTCTAGGCCCCCTTATGCAGACAAAAACTCGATTGCTATGTACCCATAACATTCAGGCAATATCTTCCGCTGATAAGATTGTTGTAATGGACAAGGGACACATAAAGTGGATGGGAAATTCAGATGACTTTCCAATTAATTCATGTGCTGATTTCTCTCCGTTGAATGAAATTGATTCAGCTTTTCAGAATCATAGACAATCTTGCAGCCCAAATCTTGCTTCCAAATCCAAGGAGCAGTCTTTTCTTGGTACAGGTATTGTGCATGCTCTGGAGGGAGCAGAGGAGATAGTTGAAGTTGAGTTGAGGAAAGAGGGAAAAGTTGAAATTGGAGTGTATAAGAATTATGCTGTCTTCACTGGCTGGTTCATGACTCTCATTATATGCCTATCAGCTATTCTGATGCAAGCTTCTCGTAATGGGAATGATTTATGGCTATCATATTGGGTTGATACAGCAACAGAAAGCAGTCAGACAAGATATTCTGTGTCTTTCTATCTGGCTATACTATGTTTCTTTTGTATTGTTAATTCCTTTTTCACATTGGTGAGGGCATTCTCTTTTGCATTTGGTGGATTACAAGCTGCAACTAAGATACACAATAAATTGCTCAACAAGCTTATCAATGCACCTGTCCAATTCTTTGATCAGACCCCTAGTGGGAGAATACTGAACAGGTTATCTTCAGATCTTTATACCATTGATGATTCACTTCCATTCATTATGAACATTCTCCTAGCTAATTTTGTAGGCTTGTTGGGTATTACAATAATTTTGTGTTACGTACAGGTCTTCTTCTTACTCTTGCTATTACCATTTTGGTATATCTACAGTAGACTTCAGTTCTTCTACAGGTCAACATCAAGAGAATTACGAAGACTGGACAGTGTTTCTCGTTCTCCAATATACTCATCTTTCACTGAAACACTTGATGGATCATCAACTATTAGGGCGTTTAAATCTGAGGACTTTTTCTTTACCAAATTCACTGAACATGTAACCTTGTATCAGAAGACTTCCTACACAGAGATAGTGGCAAGTTTGTGGCTTTCCTTGCGTCTTCAGTTATTAGGTGCATCTATCATCTCCTTCATAGCTGTGATGGCTGTTGTTGGATCTCATGGCAGTCTGCCCATCAACTTTGGTACTCCAGGACTGGTTGGATTGGCCCTCTCATATGCAGCTCCAATTGTGTCCCTGTTGGGGAGTTTTTTATCAAGCTTCACTGAAACAGAAAAGGAAATGGTTTCAGTTGAAAGAACCCTTCAATACATGGACATTAGTCAAGAAGAAGAAACTGGATGCCTATACATGAATCCAGATTGGCCAAATGAAGGATTTATCGAATTTCAGCGTGTTACTTTGAAATATATACCATCTCTGCCAGCTGCACTCTGCAATCTTAGTTTTGGAATTGCTGGAGGGACACAAGTTGGAATAATTGGAAGAACGGGTGCTGGAAAGTCCAGTGTGTTAAATGCCCTTTTCCGTCTTACCCCAATATGTACAGGCTCTATCTCAATTGATGGCGTGGATATTAAAAATATTCCTGTCAGAGAACTACGTGCACATTTGGCCATTGTTCCTCAGAGTCCATTTTTGTTCGAAGGATCATTAAGGGATAACCTAGATCCTTTCAAAACGAATGATGACTTAAAAATTTGGAATGCATTGGAAAAGTGCCACGTGAAAGAGGAAGTAGAAGTAGCTGGAGGGCTGGACCTTCTTGTAAAGGAAGGAGGGATGTCTTTTTCAGTTGGCCAGCGACAACTTCTTTGCCTCGCACGTGCACTTCTGAAATCTTCCAAGGTTCTCTGTTTGGATGAATGCACAGCCAATGTAGACATTCAAACTGCTTCACTGCTGCAAACTACCATATCCCGTGAATGTAAAGGAATGACAGTTCTCACAATTGCTCACCGGATTTCGACTGTTATAAATATGGACAACATTCTGATTCTCGACCATGGGAAATTGGCTGAACAGGGTAACCCGCAGGTTCTTCTGAAAGATGACACCTCGATATTTTCTAGTTTTGTTAGAGCTTCATCAATGTAG 4443 0.3966 MFITLKITKIHCTLILTCFFFPGLQVWDGERFSDCFEDIVLGFAVNIVTVVMVVVLAFRQKIVGGVRRSDGQRTLPEKVVLDFIPAVGACLSIVDIFFLWKKEHSSHFVGYHKWLCSCSELMVWINIIFFTKRACSRHIVFNRVFCFWWIPKAILAVLYLMTKISSLKVSICITESLVVLLNISFGLAINVIRIKRPSYKSSLLLEDPLLSNGVDLEEGGYHDLGNDGNFWDLMTFKFITPVMNHGVVKQLDSDDLLPLPTDMDPSSCHDVILSCWQAQLSNNGSKPSLFRALCSAYGWPYLRLGLLKVTNDCIGFAGPLLLNKLIQFLQQGSVNLDGYLLALSLGLTSIIKSFLDTQYTFHLSKLKLKLRSSIMTLIYEKCLRVNLAERSKFTNGEIQTFMSVDADRTVNLCNSFHDMWSLPLQIGVALYLLYTQVKFAFVSGLAITILLIPVNKWISQLIATATQQMMKEKDERIRRTGELLTYIRTLKMYGWEILFSSWLMVTRSKEVKHLATRKYLDAWCVFFWATTPTLFSLFTFGLYALMGHQLDAAMVFTCLALFNTLISPLNSFPWVINGLIDAIISSRRLSRFLACPEHKFKVGDTSSCPSSFLSEQPDSVQGLGVCIQDACCTWSNSEEQTLNLVLNHVTLSVSQGSFVAVIGEVGSGKSSLLYSILGEMQLVRGSIYSNESIAYVPQVPWILSGTVRDNILFGKSYDPERYTDTLKACALDVDVSLMIGGDMAYIGEKGVNLSGGQRARLALARALYNDSAVVMLDDVLSAVDVQVAQCILYNAILGPLMQTKTRLLCTHNIQAISSADKIVVMDKGHIKWMGNSDDFPINSCADFSPLNEIDSAFQNHRQSCSPNLASKSKEQSFLGTGIVHALEGAEEIVEVELRKEGKVEIGVYKNYAVFTGWFMTLIICLSAILMQASRNGNDLWLSYWVDTATESSQTRYSVSFYLAILCFFCIVNSFFTLVRAFSFAFGGLQAATKIHNKLLNKLINAPVQFFDQTPSGRILNRLSSDLYTIDDSLPFIMNILLANFVGLLGITIILCYVQVFFLLLLLPFWYIYSRLQFFYRSTSRELRRLDSVSRSPIYSSFTETLDGSSTIRAFKSEDFFFTKFTEHVTLYQKTSYTEIVASLWLSLRLQLLGASIISFIAVMAVVGSHGSLPINFGTPGLVGLALSYAAPIVSLLGSFLSSFTETEKEMVSVERTLQYMDISQEEETGCLYMNPDWPNEGFIEFQRVTLKYIPSLPAALCNLSFGIAGGTQVGIIGRTGAGKSSVLNALFRLTPICTGSISIDGVDIKNIPVRELRAHLAIVPQSPFLFEGSLRDNLDPFKTNDDLKIWNALEKCHVKEEVEVAGGLDLLVKEGGMSFSVGQRQLLCLARALLKSSKVLCLDECTANVDIQTASLLQTTISRECKGMTVLTIAHRISTVINMDNILILDHGKLAEQGNPQVLLKDDTSIFSSFVRASSM* 1481
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lapu5g00016 1480 FunFam ATP-binding cassette (ABC) transporter, putative 1230 1477 - -
Lapu5g00016 1480 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 625 852 IPR003439 GO:0005524
Lapu5g00016 1480 Pfam ABC transporter transmembrane region 921 1170 IPR011527 GO:0005524|GO:0016020|GO:0055085|GO:0140359
Lapu5g00016 1480 Pfam ABC transporter transmembrane region 305 569 IPR011527 GO:0005524|GO:0016020|GO:0055085|GO:0140359
Lapu5g00016 1480 FunFam ABC transporter C family member 13 608 862 - -
Lapu5g00016 1480 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 632 839 IPR027417 -
Lapu5g00016 1480 ProSitePatterns ABC transporters family signature. 753 767 IPR017871 GO:0005524|GO:0016887
Lapu5g00016 1480 CDD ABCC_MRP_domain2 1241 1460 - -
Lapu5g00016 1480 Pfam ABC transporter 646 778 IPR003439 GO:0005524
Lapu5g00016 1480 CDD ABCC_MRP_domain1 625 828 - -
Lapu5g00016 1480 Gene3D - 620 856 IPR027417 -
Lapu5g00016 1480 Pfam ABC transporter 1261 1407 IPR003439 GO:0005524
Lapu5g00016 1480 SUPERFAMILY ABC transporter transmembrane region 917 1227 IPR036640 GO:0005524|GO:0016020
Lapu5g00016 1480 Gene3D - 1228 1477 IPR027417 -
Lapu5g00016 1480 ProSiteProfiles ABC transporter integral membrane type-1 fused domain profile. 306 581 IPR011527 GO:0005524|GO:0016020|GO:0055085|GO:0140359
Lapu5g00016 1480 PANTHER ATP-BINDING CASSETTE SUB-FAMILY C 229 1477 - -
Lapu5g00016 1480 FunFam ABC transporter C family member 5 885 1226 - -
Lapu5g00016 1480 SUPERFAMILY ABC transporter transmembrane region 290 589 IPR036640 GO:0005524|GO:0016020
Lapu5g00016 1480 ProSitePatterns ABC transporters family signature. 1379 1393 IPR017871 GO:0005524|GO:0016887
Lapu5g00016 1480 SMART AAA_5 1269 1447 IPR003593 GO:0016887
Lapu5g00016 1480 SMART AAA_5 655 829 IPR003593 GO:0016887
Lapu5g00016 1480 FunFam Multidrug resistance-associated protein ABC domain protein 280 598 - -
Lapu5g00016 1480 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 1237 1468 IPR027417 -
Lapu5g00016 1480 Gene3D ABC transporter type 1, transmembrane domain 278 599 IPR036640 GO:0005524|GO:0016020
Lapu5g00016 1480 Gene3D ABC transporter type 1, transmembrane domain 889 1227 IPR036640 GO:0005524|GO:0016020
Lapu5g00016 1480 CDD ABC_6TM_MRP7_D2_like 920 1220 - -
Lapu5g00016 1480 ProSiteProfiles ABC transporter integral membrane type-1 fused domain profile. 921 1208 IPR011527 GO:0005524|GO:0016020|GO:0055085|GO:0140359
Lapu5g00016 1480 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 1243 1476 IPR003439 GO:0005524
Lapu5g00016 1480 CDD ABC_6TM_MRP7_D1_like 304 589 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lapu5g00016 Lapu-Chr5 224714 239390 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lapu5g00016 645 872 Calmodulin-binding Proteins AT2G36910 28.000 5.78e-18 88.6
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lapu5g00016 K05674 - gmx:100814181 2537.3