Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lapu5g00004 ATGTTGGTTAAAATTCACACAAATTGGTTTGTCCCCGTTGCAGTCCCAATCCCAGTGCGACACAAGCTTGGGGGTTGTTTCGTGATGGGTAAGTGGGTGTTATCCACGCATCCTCCTTCTCCATTTGAAGTCGATAATGATAAAGCAAGAAGAAGAAGATCAAATTGGCGTTGTGGTTGTGGTTCGGAGGAGGCACAGGGACTCTCTGAATCTGAACCCAAGCCGGAATGGGAAGTGCAGGAAGCTCGTAGGGCCATTTCAAGTTATCTGGGAGAATTGGGAGTGTCAGAGGAGGAATCGTTGTCCATCGCGTGGAACTGCCCGGGGTATGCGAAGATGTTGTTGGAAGGTGTGAGGGATTTGGACGAGTGGGGGTGGGAGGCTGATGAAGAAATTGCGGGGTTGAGCTTGAAGGACAAGATTCTTCGTGTTGCCTCTCAAAAGGGTGACAAGGGGAAAATTGCCTACTTAGAGACTCTTGGTCTCACTCTCTCTTGGTCTATCAACGTCGCCGGATATCTCTCCGCTCACACCCTCCCCTCTCTCATACACAAGGTTACTCGCATCAAGCAACTCTTCTTTTCTCCCGCTGATAACGATAACGAGTACGATCACCACCCCTCGTTGCTCGTAAGAAACATTCGCCTCACCATGCGCCACTTGTCCATTTCAATTGACGAAGACCTGCAACGCACTTTCTCCTTTTTCGAAAAGCTTCAAGCAAAGCCTGGTGGCCTAAACATCTTGGCTTCCCACGATGCCGCTTTCTGTTCCTTAATCCAATCCTTCCCTCGTCTCCTTCACTTATCTGTAGACAACCACTTAACACACATACTGGATTCTCTCCTCAATTTTGGAATCCCCACATCTCGCATCTCAAACATAATACTGGCTTTCCCTCCTCTTCTCTTCTGGAATCTTCAACTCCTGCAAACTAGACTCCTCGCCTTCAAGCAGATTGACGTGGCTGATCAAGATTATTCCAAATTGCTGCTAAAATATCCTTGGCTTCTGTCGACTAGTATTCAAGAAAATTATGCGAAGCTCCTTGCTTTTTCATATTCTATCAAGGTTCCAAAGACACGGATAGATCGTGCAATTAAAAGCCACCCTCATCTATTGAGTTGTTCAACTAGCAAGCTAGAGTTGATGGTAGATCAGTTTGCTAAACTTGGAGTTCGGAACAAAAAGTTAAATCAGGTTATTGCTAGAAGTCCTCAACTACTGCTACGGAAGCCCAAAGACTTTCTACAGATTGTTCTGTTGTTTGAAAATATGGATTTAGATAAAGAAACTATTGGGAGAATACTTGCCCGCTGCCCTGAAATTTTTGCTTCCAGCATTAACAAAACTTTACAAAGGAAGATTGAATTCCTTGGTAGGGTTGGCGTTGGTAAGACTTTCCTTCCTGGGGTTATCAGAAAGTATCCCGAATTACTTGTTTCTGACATTGACAAAACTTTACTACTAAGGATAATGTACTTGATGAAGTTAGGTCTCTCAGAGGAAGACATTGCATTTATGGTACGCACATTTTCTCCTCTTCTTGGGTACAGTATAGAGGGGGTTCTTAAGCCAAAAATAGAATTCCTTGTGAACTCAATGGAGAGACCAGTAAGAGATGTGGTGAGTTACCCTAGGTATTTTAGCTATTCGCTAGAGAAGAAGATAAAGCCAAGATATTGGGTGTTGAAAAGAAGGGATATCAAATGTAGCTTAAAAGATATGCTGGGAAAAAATGATGAAGACTTTGCTGCTGAATTTATGGGTATTGGAAGGGTGCCCGTCTGTCCTCCCGTGTCTTCTGATGATAGCCTGTAA 1821 0.441 MLVKIHTNWFVPVAVPIPVRHKLGGCFVMGKWVLSTHPPSPFEVDNDKARRRRSNWRCGCGSEEAQGLSESEPKPEWEVQEARRAISSYLGELGVSEEESLSIAWNCPGYAKMLLEGVRDLDEWGWEADEEIAGLSLKDKILRVASQKGDKGKIAYLETLGLTLSWSINVAGYLSAHTLPSLIHKVTRIKQLFFSPADNDNEYDHHPSLLVRNIRLTMRHLSISIDEDLQRTFSFFEKLQAKPGGLNILASHDAAFCSLIQSFPRLLHLSVDNHLTHILDSLLNFGIPTSRISNIILAFPPLLFWNLQLLQTRLLAFKQIDVADQDYSKLLLKYPWLLSTSIQENYAKLLAFSYSIKVPKTRIDRAIKSHPHLLSCSTSKLELMVDQFAKLGVRNKKLNQVIARSPQLLLRKPKDFLQIVLLFENMDLDKETIGRILARCPEIFASSINKTLQRKIEFLGRVGVGKTFLPGVIRKYPELLVSDIDKTLLLRIMYLMKLGLSEEDIAFMVRTFSPLLGYSIEGVLKPKIEFLVNSMERPVRDVVSYPRYFSYSLEKKIKPRYWVLKRRDIKCSLKDMLGKNDEDFAAEFMGIGRVPVCPPVSSDDSL* 607
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lapu5g00004 606 FunFam Mitochondrial transcription termination factor family protein 379 592 - -
Lapu5g00004 606 PANTHER CGI-12 PROTEIN-RELATED 492 589 IPR003690 GO:0003690|GO:0006355
Lapu5g00004 606 Gene3D Transcription termination factor 3, mitochondrial 379 592 IPR038538 -
Lapu5g00004 606 SMART mt_12 470 501 IPR003690 GO:0003690|GO:0006355
Lapu5g00004 606 SMART mt_12 434 465 IPR003690 GO:0003690|GO:0006355
Lapu5g00004 606 SMART mt_12 364 394 IPR003690 GO:0003690|GO:0006355
Lapu5g00004 606 SMART mt_12 539 570 IPR003690 GO:0003690|GO:0006355
Lapu5g00004 606 SMART mt_12 257 288 IPR003690 GO:0003690|GO:0006355
Lapu5g00004 606 SMART mt_12 399 429 IPR003690 GO:0003690|GO:0006355
Lapu5g00004 606 SMART mt_12 328 359 IPR003690 GO:0003690|GO:0006355
Lapu5g00004 606 SMART mt_12 506 538 IPR003690 GO:0003690|GO:0006355
Lapu5g00004 606 Pfam mTERF 279 585 IPR003690 GO:0003690|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lapu5g00004 Lapu-Chr5 83939 91862 Dispersed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR mTERF Lapu5g00004 mTERF 2.2e-91 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lapu5g00004 K15032 - gmx:100802127 896.345