Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lapu5g00003 ATGTATTCTGATGCGGAGGCGCTGGTGAAGTTCAAGAAGTCGTTGACAAATGCAGTGGCCCTCGGCAGTTGGGATCCAACCACAAACTCAAAGCCACCTTGCTCTGGCAACATTCCCAACTGGGTGGGGCTGTTTTGTTTGAAGGACAAGGTTTGGGGGTTGCGGCTGGAGAACATGGGCCTAACAGGCAACATCGACATAATGACTCTGGCCTCAATCCCCGCTCTCCGCTCGGTCAGCCTAATGAACAACACCTTTGTGGGTCCCTTGCCTAGCGTCAGGATGCTCCCAAATCTCAAGGCCCTCTACCTCTCCTACAATCATTTCTCAGGACCGATACCCGACGATGAATTTAAGGGTTTGCATAAATTGAGGAAACTCTATCTGGCCAACAATGAGTTCACAGGTCAAATTCCTTCCTCTCTTGCCTCCTTGCCTACTCTCCTCATCCTCAGGCTCGACTCAAACAAGTTTCAAGCCATCCTGGTTGTAGTGTTGGTAATATGTCGGTTGAGATCACAGACATCCCAACAGCATCACCACCAACACCAACAACCTGCTGCTGCAGATCAAAAGGCCCCAGCGTTGCTGGGCCAGGACCAAGCCTCCAGCAAATTCGTTCCTCCCATTTATGTCAAAACTAAAAGCCTAGCGGATCACTACGATGCTAGTCCCAGGCAGGTATCATCAGGTCGTGGTCATGGACACGCACCTTCCAGGAGGGTGGAACAAGGCAAACTCACATTCCTCATGCATCAAGAACCCAGGTTTGATTTGCAGGATTTGCTAAAGGCTTCCGCTGAAATTCTAGGAAGTGCAGGATTTGGGTCCTCCTACAAGGCCGTCATTTTAGACGGTTACGCCGTGGTTGTCAAGAGGTACAAGCAAATGAATGTGCCCAGAGAGGAGTTCCACGAGCACATGAGAAGACTAGGCAATCTCAACCACCCCAATCTTCTCCCTCTCCTCGCCTATTATTATAGAAAGGAAGAAAAGCTTCTACTCTCTGCCTTTGTCCACAATGGTTGCTTGGCCAGTCATCTTCACGGCAATCATAACTATCAAAAGCCGGGACTTGATTGGCCCACTCGCTTGAAAATCGTGAAAGGTATAGCTAGGGGTTTGGCTTACCTCTACAGTGCACTCCCAAGCGTAATTGTGCCTCATGGTCATCTCAAATCTTCCAACGTGCTTTTGGATAAATCCTTCGAGCCCCTGCTCACTGATTATGCCCTCAGTCCCGTCATCAACCTTGACCATGCCCAAAAAATTATCATGCCTTATAAATCTCCCGAGTATGCTCAACTTGGGCGCATTACAAAGAAGACTGATGTGTGGAGTTTTGGAATTCTGATACTGGAGATCTTGACAGGCAAATTCCCCGAGAACTATCTCACACTTAGGCACAATACTGATTCTGACATAGCCAGTTGGGTAAATACCATGATTACTGAGAAGCGCACCAGTGACGTGTTTGATGTAGAGATGGGAGGAATCGGAAATTGTAAAGCTGAATTACTCAAACTCTTGAAGATTGGCTTGAGTTGTTGTGAGGAGAATGTGGAAAGAAGGCTTGATATCAAGGAAGCTCTTGAGCAAATTGAAGACTTAAAAGAGAGTGAAAGCGATGCTATTGTTGGAGAATACTCCTCCACTCTCATCACCACTGAAAGAAATGCTTATAGAGCTATACAATGCCTTGATGTCCTACTTGAAGACAATGATGTTGTGAAAGCAATTACAGAATATGTCTCTTATGCTGCAATTGAAAACTTGGTGATTGGTGCAACATCCAGGCATGGGTTTATTCGATTTAAGTCATCATCAAGTGCATCAAGTAGCATATCAAAGGGGGCCCCAGACTTTTGTACCGTGTTTATCATTTCAAAGGGTAAAATCTCGTCAGTTCGGAATGCTACTCGTCCAGCCGCACATACATCCCCACTGCTGAGACACATACACAAGACATCAATCAGACCTCAGGGCTGGCTCGATGAATCTATTAAATCTCCATTTCCTAGAGGAAGAGGCACGGGTGGAATGTTATGCGCGGACTTCCCAGACTCAGATACAGAAATATCATTTGTAAGCTCTGATAGGCCAAGCAGTGGTCGTTCATCCTCCGTTTATGAATGTATTGACGCTGGCCGAACTTCAATAGCTTCTACCAGTTCAGATCATAGCTTTGGATCAACCCGATTGGGACTCAAGTTCAATAATCCCAGTTCACCCGATACGCCATTCTCTCATGAACGCAATAGAACATCATTCGCATATTCATCACAGAGCATGGATGAAGCAGCGGAAGCTGATTTGAGGAAGCTGAAGCTTGAGTTAAAGCAAACGATGGAGATGTACAGTACAGCATGCAGAGAAGCACTAACAGCCCAGCAGAAGTTAATGGAGTTGACCCACTGGAGAATTGAGGAAGAAAAAAAAATAGAAGCGGTACAATTGGCTCAGGAAGCTGCGCTGGCAATTGCAGAGAAAGAGAAAGCAAGATGTAGAGCAGCCATGGAAACTGCTGAAGCATCTAAGAAAATTGCTAAGATTGAAACACACAAAAGAGCAAGTGTTGAAACTAAAGCTCTTAAAGAAGCAGAGAAAATGAGGAAGCTTTTGGACAATCTAGCCCAAGCTGATGTAAGATATAGGAGATACAGTATAGAGGAGATTGAAGCAGCCACGAACTTCTTTTCTGAATCCCAAAAAATCGGGGAAGGAGGTTATGGCCCTGTTTATAAATGTTTCCTTGATCACACTCCAGTGGCTGTCAAGGTTCTACGTCCAGATGCTGCTCAAGGGAAGTCACAGTTTCAGCAAGAGATTGACATTCTGAGCTGCATGCGACACCCAAACATGGTGCTTCTTCTAGGAGCGTGTCCGGAGTATGGCACTCTGATTTATGAATATATGGCTAATGGAAGCCTAGAAGATTGTCTGTTTCGAAAAAGGAATAACAGTGTTCTGTCTTGGCAGCTGAGGTTCCGAATTGCTGAAGAGATAGCGACGGGCCTACTATTCCTGCATCAGACCAAGCCTGAACCTTTAGTGCACCGTGATCTGAAACCAGGCAACATTTTGCTTGACCAGAATTATGTGAGCAAGATAAGCGATGTTGGATTGGCAAGGCTTGTCCCAGAAGTTGCTGAAAACGTAACACAATGCTGCATGACATCAGCAGCTGGAACATTTTGTTATATTGATCCTGAGTATCAACAAACAGGAATGCTTGGTGTCAAGTCGGATGTTTATTCTCTTGGAATAATTTTTCTTCAGCTATTGACAGGCAGACCTCCAATGGGATTAGCTCACCGTACCGCAGAGGCTATGGAGAAGGGCACCTTTGAGGAAATGCTGGACCCATCTGTAACCGATTGGCCTCTTCAACAAGTCTTATGCCTTGCAAAGATAGCAGTCAAGTGTGCGGAACTTAGGCGAAAGGATAGGCCAGACCTTGCCAAAGTAGTGTTGCCAGAGCTAGATAAATTGAGAGACTTTGCCGATGAAAACATGACAGTACGGTCCTTGCCCGTCATTTTAGGATGCACTGCGCCTTCGCCCTGCCACAGTGATACTCCTGTGCAACAGGATGTGATAAGCGACCCGCGCGTTGTACATTCCGTAGGCTCATCAGCTCCATCAACCCCCACGGAAGGAAAACCTTAA 3669 0.4609 MYSDAEALVKFKKSLTNAVALGSWDPTTNSKPPCSGNIPNWVGLFCLKDKVWGLRLENMGLTGNIDIMTLASIPALRSVSLMNNTFVGPLPSVRMLPNLKALYLSYNHFSGPIPDDEFKGLHKLRKLYLANNEFTGQIPSSLASLPTLLILRLDSNKFQAILVVVLVICRLRSQTSQQHHHQHQQPAAADQKAPALLGQDQASSKFVPPIYVKTKSLADHYDASPRQVSSGRGHGHAPSRRVEQGKLTFLMHQEPRFDLQDLLKASAEILGSAGFGSSYKAVILDGYAVVVKRYKQMNVPREEFHEHMRRLGNLNHPNLLPLLAYYYRKEEKLLLSAFVHNGCLASHLHGNHNYQKPGLDWPTRLKIVKGIARGLAYLYSALPSVIVPHGHLKSSNVLLDKSFEPLLTDYALSPVINLDHAQKIIMPYKSPEYAQLGRITKKTDVWSFGILILEILTGKFPENYLTLRHNTDSDIASWVNTMITEKRTSDVFDVEMGGIGNCKAELLKLLKIGLSCCEENVERRLDIKEALEQIEDLKESESDAIVGEYSSTLITTERNAYRAIQCLDVLLEDNDVVKAITEYVSYAAIENLVIGATSRHGFIRFKSSSSASSSISKGAPDFCTVFIISKGKISSVRNATRPAAHTSPLLRHIHKTSIRPQGWLDESIKSPFPRGRGTGGMLCADFPDSDTEISFVSSDRPSSGRSSSVYECIDAGRTSIASTSSDHSFGSTRLGLKFNNPSSPDTPFSHERNRTSFAYSSQSMDEAAEADLRKLKLELKQTMEMYSTACREALTAQQKLMELTHWRIEEEKKIEAVQLAQEAALAIAEKEKARCRAAMETAEASKKIAKIETHKRASVETKALKEAEKMRKLLDNLAQADVRYRRYSIEEIEAATNFFSESQKIGEGGYGPVYKCFLDHTPVAVKVLRPDAAQGKSQFQQEIDILSCMRHPNMVLLLGACPEYGTLIYEYMANGSLEDCLFRKRNNSVLSWQLRFRIAEEIATGLLFLHQTKPEPLVHRDLKPGNILLDQNYVSKISDVGLARLVPEVAENVTQCCMTSAAGTFCYIDPEYQQTGMLGVKSDVYSLGIIFLQLLTGRPPMGLAHRTAEAMEKGTFEEMLDPSVTDWPLQQVLCLAKIAVKCAELRRKDRPDLAKVVLPELDKLRDFADENMTVRSLPVILGCTAPSPCHSDTPVQQDVISDPRVVHSVGSSAPSTPTEGKP* 1223
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lapu5g00003 1222 Pfam Leucine rich repeat 97 158 IPR001611 GO:0005515
Lapu5g00003 1222 Gene3D Phosphorylase Kinase; domain 1 235 338 - -
Lapu5g00003 1222 FunFam pollen receptor-like kinase 1 234 338 - -
Lapu5g00003 1222 Gene3D Ribonuclease Inhibitor 1 176 IPR032675 -
Lapu5g00003 1222 Gene3D Transferase(Phosphotransferase) domain 1 339 547 - -
Lapu5g00003 1222 SUPERFAMILY L domain-like 31 162 - -
Lapu5g00003 1222 SUPERFAMILY Protein kinase-like (PK-like) 268 537 IPR011009 -
Lapu5g00003 1222 ProSiteProfiles Protein kinase domain profile. 899 1161 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lapu5g00003 1222 SUPERFAMILY Protein kinase-like (PK-like) 883 1157 IPR011009 -
Lapu5g00003 1222 Pfam Leucine rich repeat N-terminal domain 3 46 IPR013210 -
Lapu5g00003 1222 FunFam Adenine nucleotide alpha hydrolase-like domain kinase 871 971 - -
Lapu5g00003 1222 Coils Coil 825 845 - -
Lapu5g00003 1222 SMART serkin_6 899 1168 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lapu5g00003 1222 Gene3D Phosphorylase Kinase; domain 1 878 971 - -
Lapu5g00003 1222 ProSiteProfiles Protein kinase domain profile. 264 537 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lapu5g00003 1222 FunFam U-box domain-containing protein 51 972 1171 - -
Lapu5g00003 1222 Coils Coil 520 540 - -
Lapu5g00003 1222 Coils Coil 765 785 - -
Lapu5g00003 1222 PANTHER OS02G0152300 PROTEIN 562 1204 - -
Lapu5g00003 1222 Pfam Protein kinase domain 900 1152 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lapu5g00003 1222 Gene3D Transferase(Phosphotransferase) domain 1 972 1176 - -
Lapu5g00003 1222 Pfam Protein tyrosine and serine/threonine kinase 268 532 IPR001245 GO:0004672|GO:0006468
Lapu5g00003 1222 FunFam Pollen receptor-like kinase 1 339 547 - -
Lapu5g00003 1222 ProSitePatterns Serine/Threonine protein kinases active-site signature. 1017 1029 IPR008271 GO:0004672|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lapu5g00003 Lapu-Chr5 72286 82051 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lapu5g00003 265 539 Receptor kinase-like Gene Family AT1G78940 29.720 2.58e-21 98.6
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_RLCK-IXb Lapu5g00003 PK_Tyr_Ser-Thr 3.9e-26 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lapu5g00003 - - gmx:100801601 1065.83