Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lapu4g01544 ATGTCTTCTTCTTATTCCTCTAGCAGATGGACATCTGAGGAGAACAAAGCGTTTGAAAGAGCTCTAGCAGTTTATGACAAGGACACCCCAAACCGTTGGTGCAACATTGCAATGGCTGTTGGTGGAAAAACTCCAGAGGAAGTTAAGAGGCACTATGATCTCCTTGTGGAGGACATCAGGCGTATTGAGTCAGGCCAAGTTCCCTTTCCAACCTATAGGAACCTCAAAGATGGGGCCTGA 240 0.4667 MSSSYSSSRWTSEENKAFERALAVYDKDTPNRWCNIAMAVGGKTPEEVKRHYDLLVEDIRRIESGQVPFPTYRNLKDGA* 80
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lapu4g01544 79 CDD SANT 9 52 IPR001005 -
Lapu4g01544 79 SMART sant 6 58 IPR001005 -
Lapu4g01544 79 Gene3D - 1 69 - -
Lapu4g01544 79 ProSiteProfiles Myb-like domain profile. 2 56 IPR001005 -
Lapu4g01544 79 ProSiteProfiles SANT domain profile. 5 60 IPR017884 -
Lapu4g01544 79 FunFam Transcription factor SRM1 2 69 - -
Lapu4g01544 79 Pfam Myb-like DNA-binding domain 8 52 IPR001005 -
Lapu4g01544 79 SUPERFAMILY Homeodomain-like 8 64 IPR009057 -
Lapu4g01544 79 PANTHER MYB FAMILY TRANSCRIPTION FACTOR-RELATED 3 74 IPR044636 GO:0003700
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lapu4g01544 Lapu-Chr4 32545265 32545504 Transposed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB-related Lapu4g01544 Myb_DNA-binding 1.4e-06 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lapu4g01544 - - gmx:100784910 143.665