Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lapu4g01541 ATGCTGAAACCCACTTCTCTTTCTCTATCCCACATTTCCTCTTCTCTCTTCTCCCATTCCCCACCCATGTCCTCCTCAAGCTTCAGATTCTTCTTCTGCAACTGTCACAGACTCTGCCCAACGCTCTCTTCTTCTTCTTCCTTGCTTTTTTCACGCCCAAGACCCCTCTCTACCACCCCATATCCCCTTCAATATGAACTCATCATCAACCGTCCATCCTACCCTCGCCCACCAACCGTTCGACCAATTGACTCACCCGAACCTGTCGAACCCACTTCCGAGAATCGTCCCCAACTCGATAAGGCCCAGAGGAAGTACTACAACAAGCGCAGGAAGAGGATGTACGGCTCCGATTCCGACCAAGATGACGCCGGGCGTCGCGACGATGCGTTTGTGGAGTTGAAGCCCGAGGTGGTGGAATTCCCCACGCTGCACAAGAGGGAGGAAGAGTTGTACTTCCACGACGCGTTTACGTATCCCTGGGAGAAGGACAAACATTACAAGATGGTTTATCAGTTGGAGAAGAAGTACTTTCCTGATCAGTCGCTTGACAAGGCCTTTCTCCAACCGGGACAGTCAAATGTTAATGCTGATGGAACTGGAAAAGCAAATGTTAATGTTAATGCAGTTGGAAAGGGCGAGGGTAGGAAGAAAGTTGTTGGTGTTGATGAAAAGTTGGTGTTTTTTGAGGGAAAAGAGAAGGGCGAGGAAGGTGAAAGTGGAAGTAGAGAACTGAAGGAGAAGAAGGTTGAGGAGTTCTTCAAGGGTTTGAAGAAGGTTCCTGGTAGTAACAAGGATGTTCAAGTTGGAGAGCCTTTTCTTTCGTCAAGAAGGACCGGTCTTCCTCCTGTGTGGGATAGTCCGCATGGCACTGTGGTTTTGGTCAACAAACCGAAAGGATGGACTTCATTCACTGTTTGTGGAAAACTACGTCGTCTTGTCAAAGTGAAAAAGGTTGGTCATGCTGGGACCCTTGACCCAATGGCTACTGGTTTATTGATTGTTTGTGTTGGCAAAGCAACAAAACTGGTGGACAGATATCAAGGAATGATTAAGGGTTATAGTGGGGTTTTCCGCTTGGGGGAGGCTACTTCAACATGGGATGCCGACTCACCAGTCATTCAACGCGAGCCATGGGAGCATGTCAAAGATGAGGATATAAAGAGGAATGCTTTGTCCTTTTGTGGGGAGATTTGGCAAGTTCCCCCTATGTTCTCAGCTATTAAAGTTGGAGGAGAAAAGATGTATGAGAAAGCAAGGAGGGGAGAAAGCATTGAACTTTCACCTAGACGAATTTCAATTTTCCAGTTTGACACAGAGCGCAGCTTAGATGACAGACAAAATTTGATTTTTAGAGTGACATGTTCCAAAGGGACATATATTCGCTCACTTTGTGCAGATTTTGGAAAGGCTCTTGGCAGCTGTGCCCATTTAACTGCTCTACGAAGAGATTCAATTGGGCAATATTCAGCTGATGATGCATGGGACTTTCAAGAGCTGGAAGAGGCTATCACCAAAAGTTATCTCTAA 1530 0.4667 MLKPTSLSLSHISSSLFSHSPPMSSSSFRFFFCNCHRLCPTLSSSSSLLFSRPRPLSTTPYPLQYELIINRPSYPRPPTVRPIDSPEPVEPTSENRPQLDKAQRKYYNKRRKRMYGSDSDQDDAGRRDDAFVELKPEVVEFPTLHKREEELYFHDAFTYPWEKDKHYKMVYQLEKKYFPDQSLDKAFLQPGQSNVNADGTGKANVNVNAVGKGEGRKKVVGVDEKLVFFEGKEKGEEGESGSRELKEKKVEEFFKGLKKVPGSNKDVQVGEPFLSSRRTGLPPVWDSPHGTVVLVNKPKGWTSFTVCGKLRRLVKVKKVGHAGTLDPMATGLLIVCVGKATKLVDRYQGMIKGYSGVFRLGEATSTWDADSPVIQREPWEHVKDEDIKRNALSFCGEIWQVPPMFSAIKVGGEKMYEKARRGESIELSPRRISIFQFDTERSLDDRQNLIFRVTCSKGTYIRSLCADFGKALGSCAHLTALRRDSIGQYSADDAWDFQELEEAITKSYL* 510
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lapu4g01541 509 Hamap tRNA pseudouridine synthase B [truB]. 289 509 IPR014780 GO:0001522|GO:0003723|GO:0009451|GO:0009982
Lapu4g01541 509 MobiDBLite consensus disorder prediction 76 126 - -
Lapu4g01541 509 Pfam tRNA pseudouridylate synthase B C-terminal domain 462 505 IPR032819 -
Lapu4g01541 509 SUPERFAMILY Pseudouridine synthase 291 504 IPR020103 GO:0001522|GO:0003723|GO:0009451|GO:0009982
Lapu4g01541 509 FunFam tRNA pseudouridine synthase B 286 508 - -
Lapu4g01541 509 Pfam TruB family pseudouridylate synthase (N terminal domain) 311 461 IPR002501 GO:0006396
Lapu4g01541 509 PANTHER TRNA-PSEUDOURIDINE SYNTHASE 176 507 IPR014780 GO:0001522|GO:0003723|GO:0009451|GO:0009982
Lapu4g01541 509 NCBIfam tRNA pseudouridine(55) synthase TruB 291 500 IPR014780 GO:0001522|GO:0003723|GO:0009451|GO:0009982
Lapu4g01541 509 CDD PseudoU_synth_EcTruB 292 503 IPR014780 GO:0001522|GO:0003723|GO:0009451|GO:0009982
Lapu4g01541 509 Gene3D Pseudouridine synthase 286 508 - -
Lapu4g01541 509 MobiDBLite consensus disorder prediction 112 126 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lapu4g01541 Lapu-Chr4 32519253 32525008 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lapu4g01541 292 483 NAC Transcription Factor Family AT3G57150 33.854 1.88e-20 92.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lapu4g01541 K03177 - gmx:100793939 729.554