Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lapu4g01537 ATGATACGTTTGGAGAGGAGCTGCCTTGGTAATACGGGAGGAATTGCAAGGAAAGTGAAAAAAACTACTCTGTCAGCTGCTGATCAAATCAAGGACTGTGAAACATATCGTAAATGTCCCAAATGTCATTATTATACTAATAACAGTGATGTTTGTCATGAGTGGCATGACTTTCCTGTTGGTGTAAAGTTTGATCCTTCTGATGTTGAGCTTTTAGAGCATTTGGCAGCAAAGTGTTGTGTTGGAAACAGAGAGCCACACGTGTTTATTAATGAGTTCATCCCAACTTTAGAAGGGGAGCAAGGTATTTGCTACACTCATCCACAAAATCTTCCAGGTGCTAGGAAAGATGGGAATAGTGTCCATTTCTTCCACAAAACAGTTAATGCATATGCTACTGGAAGAAGAAAGCGTAGAAAGATTCATCATCAAGATGGTTTGGCTGAGGGGCATGTTCGCTGGCACAAGACTGGTAGGACCAAATCTGTGATAGAAGATGGAGTTCATAAGGGCTTTAAGAAGATCATGGTCCTTTATGTAAGATCTAAGGAAGGGTCCAAGCCATATAAAACCAATTGGGTGATGCATCAGTACCATCTAGGAAGTGAAGAAGAGGAGAAGGATGGTGAATATGTGGTTTCAAAAATATTTTATCAACAGCAGAAGCACACTAAGAAGAATGAGGAGAATATAGTAGTTGAAGATTCTCACATAGCAGCACAAACATGTCCAAGTACCCCAAAACCAAATCCCCCTACTCGACCTTGTACAGGCAAATGTGATGACAATTTTGATGAAAATGAAGTTCAGTCATTCATCCAGGATACCAAGCCAATACCTGGAGAATCACTTGCCCCCCCACCATCTGATGTTAAGGATGAGAATATTAAGGTTGACCCTGCATGGTTGGCCTGTGAATCACAGGCTGATTGTGACTTTGATGGCTTGGAGGATATATTCTTATGCAATTCATCTGCTCTTTTTAATCATTCTGGATTGGCCTCCACTTTGAATGACACTGCAAACAAGTTGGTTGCACCTGGAAACAGTAATGATTATCCATCTTATGAAGTTTCTGTCCTGGGCACCCTGGAATTGGACAGTCCTCCAGATTTTGATCTTTCTAATTTACAATTTGGCTCTCAGGACAGCACCCTTCAGTGGATGGACAAGCTATAA 1179 0.4114 MIRLERSCLGNTGGIARKVKKTTLSAADQIKDCETYRKCPKCHYYTNNSDVCHEWHDFPVGVKFDPSDVELLEHLAAKCCVGNREPHVFINEFIPTLEGEQGICYTHPQNLPGARKDGNSVHFFHKTVNAYATGRRKRRKIHHQDGLAEGHVRWHKTGRTKSVIEDGVHKGFKKIMVLYVRSKEGSKPYKTNWVMHQYHLGSEEEEKDGEYVVSKIFYQQQKHTKKNEENIVVEDSHIAAQTCPSTPKPNPPTRPCTGKCDDNFDENEVQSFIQDTKPIPGESLAPPPSDVKDENIKVDPAWLACESQADCDFDGLEDIFLCNSSALFNHSGLASTLNDTANKLVAPGNSNDYPSYEVSVLGTLELDSPPDFDLSNLQFGSQDSTLQWMDKL* 393
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lapu4g01537 392 FunFam NAC domain-containing protein 8 67 223 - -
Lapu4g01537 392 PANTHER NAC DOMAIN-CONTAINING PROTEIN 73 7 268 IPR044799 GO:0003700
Lapu4g01537 392 Gene3D NAC domain 67 225 IPR036093 GO:0003677|GO:0006355
Lapu4g01537 392 ProSiteProfiles NAC domain profile. 58 219 IPR003441 GO:0003677|GO:0006355
Lapu4g01537 392 Pfam No apical meristem (NAM) protein 59 200 IPR003441 GO:0003677|GO:0006355
Lapu4g01537 392 SUPERFAMILY NAC domain 43 219 IPR036093 GO:0003677|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lapu4g01537 Lapu-Chr4 32501216 32504767 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lapu4g01537 23 221 NAC Transcription Factor Family AT1G28470 50.230 1.90e-64 206
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NAC Lapu4g01537 NAM 9.5e-21 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lapu4g01537 - - pvu:PHAVU_004G004900g 637.876