Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lapu4g01524 ATGGAGTCACCTGTTAATGGAGTTGATTCCTTGTCAGAGGTTCAGAATTCAGTTTCTGGAGTACATCATGACCCTCCTTCATCTGGGACTCCCCTACCTTCGAGGCCTCCCTTGAGAGCATCTAGAAACCATGAGGGTGGTCATGAAACTAAGACCATCCACCATCAAAACAGCCATGTAATTAATCAAAAACATTCCTATCAAGAGGGCAATAACTTGTTGAAGCAAGAAGGGTTGCCAACAAAATTGTCCAGCAAGCAGCCACCACTTGATGATTCCAAGGGTTGTGAGTCAAATGTTGTGTTAGAATCTGAGACGAAACGACCCGTTGCTAATCATGCAAAGAACTACTGTCAGCCAGAGGCTACATTCTGCCCAAGTCCTCAGAATAGTTTCTATTCAGCCACTGTCTACTCAGAAGCCAAAGAAAGTTTCACCAACACTGAAGTCAGCGAGTGTGCTAGTGTTGACAAGTCATGTGAAAGTGAAGAAGTGGCAAATTCCAGTGATTTTAATGAGAGCAGGAAGACAAGCATATGTAGAGCAAGTACTGGCAGTGATGCTAGTGATGAGAGCAGCACCAGTAGTTTGAGCAGTGTTTTGTATAAACCTCACAAGGCAAATGACATAAGATGGGAAGCGATTCAAGCTGTTCGAACCAGAGATGGGATGTTGGAAATGAGGCATTTCAGGTTGTTGAAGAAATTGGGGTGTGGAGACATTGGGAGTGTGTATCTAGCTGAACTGAGTGGCACAAGAACTTCTTTTGCCATGAAGGTCATGAACAAGACCGAGCTGGCAAACCGCAAAAAGCTCCTGAGGGCTCAGACAGAGAGAGAGATATTACAGTCCTTAGATCATCCTTTTCTACCCACATTGTATACACACTTTGAGACAGAAACATTCTCTTGCTTAGTAATGGAGTTCTGTCCTGGTGGGGACCTGCATGCACTCAGGCAAAGACAACCAGGGAAGTATTTTTCGGAGCATGCTGTCAGGTTTTATGTGGCAGAAGTTCTCCTTGCTTTGGAGTACTTGCACATGCTTGGGATCATCTACAGAGACCTCAAACCTGAGAATGTGTTGGTGAGAGAAGATGGTCACATAATGCTTTCAGACTTCGATCTCTCTCTAAGGTGCACTGTGAGTCCAACTCTAGTGAAGTCATCAAACAACTTGGAGACCAAAAGCTCAGGATACTGCGTTCAGCCTTCCTGCATTGAGCCAACATGTGTGATCCAGCCGGACTGCATCCGACCGTCATGCTTCACACCGCGCTTTCTATCTGGAAAATCCAAGAAAGACAAAAAGTCTAAACCAAAGAATGATATGCATAACCAGGTGACCCCTCTTCCTGAGCTAATTGCAGAGCCAACAAATGCAAGATCAATGTCCTTTGTTGGAACACACGAGTACCTGGCACCAGAGATCATCAAGGGTGAAGGGCATGGAAGTGCTGTGGACTGGTGGACATTTGGGATATTCCTGTATGAACTTTTGTTTGGTAGAACACCATTCAAAGGTTCAGCCAATCGTGCAACTCTGTTTAATGTAATTGGTCAGCCTCTAAGGTTTCCAGAATCTCCAACTGTGAGCTTTGCTGCCAGGGACTTGATCAGAGGGTTGCTTGTGAAAGAGCCTCAGCACCGTCTTGCCTATAGACGTGGCGCCACAGAGATAAAGCAACATCCTTTCTTTCAGAATGTTAACTGGGCACTCATCCGTTGTGCAAATCCTCCAGAGGTTCCAAGGCAGGTTATGAATCTTCCTCAAACGGAAAAGGACCTTGGTGTGAAGCCTTCTGGTAATTATTTAGATATCGATTTCTTTTGA 1833 0.4506 MESPVNGVDSLSEVQNSVSGVHHDPPSSGTPLPSRPPLRASRNHEGGHETKTIHHQNSHVINQKHSYQEGNNLLKQEGLPTKLSSKQPPLDDSKGCESNVVLESETKRPVANHAKNYCQPEATFCPSPQNSFYSATVYSEAKESFTNTEVSECASVDKSCESEEVANSSDFNESRKTSICRASTGSDASDESSTSSLSSVLYKPHKANDIRWEAIQAVRTRDGMLEMRHFRLLKKLGCGDIGSVYLAELSGTRTSFAMKVMNKTELANRKKLLRAQTEREILQSLDHPFLPTLYTHFETETFSCLVMEFCPGGDLHALRQRQPGKYFSEHAVRFYVAEVLLALEYLHMLGIIYRDLKPENVLVREDGHIMLSDFDLSLRCTVSPTLVKSSNNLETKSSGYCVQPSCIEPTCVIQPDCIRPSCFTPRFLSGKSKKDKKSKPKNDMHNQVTPLPELIAEPTNARSMSFVGTHEYLAPEIIKGEGHGSAVDWWTFGIFLYELLFGRTPFKGSANRATLFNVIGQPLRFPESPTVSFAARDLIRGLLVKEPQHRLAYRRGATEIKQHPFFQNVNWALIRCANPPEVPRQVMNLPQTEKDLGVKPSGNYLDIDFF* 611
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lapu4g01524 610 SMART serkin_6 230 566 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lapu4g01524 610 CDD STKc_phototropin_like 228 584 - -
Lapu4g01524 610 Pfam Protein kinase domain 463 566 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lapu4g01524 610 Pfam Protein kinase domain 231 384 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lapu4g01524 610 SUPERFAMILY Protein kinase-like (PK-like) 205 588 IPR011009 -
Lapu4g01524 610 MobiDBLite consensus disorder prediction 1 96 - -
Lapu4g01524 610 ProSitePatterns Serine/Threonine protein kinases active-site signature. 351 363 IPR008271 GO:0004672|GO:0006468
Lapu4g01524 610 FunFam Serine/threonine-protein kinase D6PK-like 228 313 - -
Lapu4g01524 610 MobiDBLite consensus disorder prediction 41 55 - -
Lapu4g01524 610 FunFam serine/threonine-protein kinase D6PK-like 314 381 - -
Lapu4g01524 610 PANTHER FLIPPASE KINASE 1-RELATED 73 588 - -
Lapu4g01524 610 ProSiteProfiles Protein kinase domain profile. 230 566 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lapu4g01524 610 MobiDBLite consensus disorder prediction 1 24 - -
Lapu4g01524 610 Gene3D Transferase(Phosphotransferase) domain 1 460 584 - -
Lapu4g01524 610 Gene3D Transferase(Phosphotransferase) domain 1 314 383 - -
Lapu4g01524 610 Gene3D Phosphorylase Kinase; domain 1 228 313 - -
Lapu4g01524 610 FunFam serine/threonine-protein kinase D6PK-like 461 584 - -
Lapu4g01524 610 MobiDBLite consensus disorder prediction 430 451 - -
Lapu4g01524 610 MobiDBLite consensus disorder prediction 56 92 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lapu4g01524 Lapu-Chr4 32412023 32422380 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lapu4g01524 138 610 AGC Kinase Gene Family AT5G47750 71.805 0.0 709
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK AGC_RSK-2 Lapu4g01524 Pkinase 8.3e-38 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lapu4g01524 K08286 - gmx:100810909 1076.23