Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lapu4g01523 ATGGAATCACCCGGTAACGAGCATGTGGTGGGTGCCGCTGACCCCAACGACGTCGTTACGCCCTTCTCCCACAGAGAAGAACCCCACAATTCCCAACCCCTCACCGGCGACGGTGCCAGTCCCGGAAAGATATTTATAGGTGGTTTAGCGAGAGAAACGACCATTGCTCAATTTATCAAGCACTTTGGGAAATATGGTGAGATCACGGATTCCGTCATCATGAAGGACAGGAAAACAGGGCAACCTCGTGGATTCGGGTTTATAACGTACGCCGATCCCTCTGTGGTTGATAAAGTCATTGAAGACCCTCATATCATCAATGGAAAACAAGTTGAGATTAAGCGGACGATACCAAGGGGAGCTGTTGGCTCTAAGGATTTTAGGACAAAGAAAATTTTTGTAGGTGGAATTCCTTCAAATGTGACTGAAGATGAATTTAGAGACTTCTTTACTCGCTATGGTGAAGTGAAAGATCACCAAATAATGCGGGACCATTCCACCAACCGATCTCGTGGCTTTGGGTTTATCACATTTGACTCTGAAGAAGCAGTTGATGATCTTCTATCCATGGGGAACAAAATTGAATTTGCTGGAGCTCAGGTGGAAATCAAGAAGGCTGAACCAAAGAAGCCAAACTCTGCACCTCCATCATCCAAGCGCTACAATGACTCAAGGTCTTCATACAGCAATGCTGGATACGGAGATGCCTATGATGGATTTGGTGGCAGTTTTGGAGTTGGAGGTGGTTATAGGTCAGGTGGTGCTTATGGTGGTGGTAGGGGTGGTGCTTATGGTGCCTATGGAAGTGAATTTGGTGGTTATGGAGGATATGCTGGTGCAATGGGACCATATAGAGGAGATCCGTCCCTCGGGTATGCTGGTCGTTATGGTGGAAGCTTTAGTAGAGGATATGATCTTGGTGGCTATGGCGGACCTAGTGAGAATTATGGGGCATATGGTGGGGGTGGTGGTTCTTCTGTCGGTGGCAGTGCTGGTGCCTATCAAAGTGGCTATGATGGCAACCTAGGAGGTGGATATGGAGGAGCTAGTGGAGGTCCCTTCTATGGGAGCAGTAGAGGTGGCTATGGTGCTGGCCGATACCATCCTTATGGAAGATAA 1119 0.4799 MESPGNEHVVGAADPNDVVTPFSHREEPHNSQPLTGDGASPGKIFIGGLARETTIAQFIKHFGKYGEITDSVIMKDRKTGQPRGFGFITYADPSVVDKVIEDPHIINGKQVEIKRTIPRGAVGSKDFRTKKIFVGGIPSNVTEDEFRDFFTRYGEVKDHQIMRDHSTNRSRGFGFITFDSEEAVDDLLSMGNKIEFAGAQVEIKKAEPKKPNSAPPSSKRYNDSRSSYSNAGYGDAYDGFGGSFGVGGGYRSGGAYGGGRGGAYGAYGSEFGGYGGYAGAMGPYRGDPSLGYAGRYGGSFSRGYDLGGYGGPSENYGAYGGGGGSSVGGSAGAYQSGYDGNLGGGYGGASGGPFYGSSRGGYGAGRYHPYGR* 373
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lapu4g01523 372 Gene3D - 42 121 IPR012677 -
Lapu4g01523 372 PANTHER RNA-BINDING (RRM/RBD/RNP MOTIFS) FAMILY PROTEIN 31 372 - -
Lapu4g01523 372 FunFam Heterogeneous nuclear ribonucleoprotein 1 41 123 - -
Lapu4g01523 372 SUPERFAMILY RNA-binding domain, RBD 120 218 IPR035979 GO:0003676
Lapu4g01523 372 SMART rrm1_1 131 204 IPR000504 GO:0003723
Lapu4g01523 372 SMART rrm1_1 43 114 IPR000504 GO:0003723
Lapu4g01523 372 SUPERFAMILY RNA-binding domain, RBD 32 120 IPR035979 GO:0003676
Lapu4g01523 372 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 42 118 IPR000504 GO:0003723
Lapu4g01523 372 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 44 110 IPR000504 GO:0003723
Lapu4g01523 372 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 132 200 IPR000504 GO:0003723
Lapu4g01523 372 Gene3D - 130 212 IPR012677 -
Lapu4g01523 372 MobiDBLite consensus disorder prediction 205 226 - -
Lapu4g01523 372 MobiDBLite consensus disorder prediction 1 39 - -
Lapu4g01523 372 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 130 208 IPR000504 GO:0003723
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lapu4g01523 Lapu-Chr4 32402144 32406383 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lapu4g01523 42 198 Eukaryotic Initiation Factors Gene Family AT1G71770 27.168 6.41e-11 62.0
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lapu4g01523 K12741 - gmx:100793209 545.428