Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lapu4g01508 ATGGCCTCTTCTAGCTACTCCAATTCTCCATGTGCAGCCTGCAAGTTTTTGAGGAGGAAGTGCATGCCAGATTGCATTTTCGCCCCATATTTCCCTCCAGAGGAGCCACAGAAGTTTGCCAATGTGCACAAGATCTTTGGTGCAAGCAACGTGAGCAAGCTCCTGAACGAGGTGCAACCCTATCAGAGAGAGGATGCTGTGAACTCTCTGGCCTATGAAGCTGAAGCAAGGATCAAGGATCCTGTGTATGGTTGTGTTGGTGCCATTTCAGTTCTCCAAAGACAAGTCCTTAAACTCCAAAAGGAACTTGATGCCACAAACGCTGATTTGATCCGCTACACCACTTGCAATGAAATGCCAAACAGTAGTAGTACTCATCATGGAGGAAGAAGCAAGATGAGTAGTGATGATGATGGTGGTGGTTCCTCACATGCTTTAAGCTTCTATTATGCTTCTGCTAATTGGAACAACGATCCTTCTGAAAACTGCTACCCCAGAGGAGATATATAA 510 0.4569 MASSSYSNSPCAACKFLRRKCMPDCIFAPYFPPEEPQKFANVHKIFGASNVSKLLNEVQPYQREDAVNSLAYEAEARIKDPVYGCVGAISVLQRQVLKLQKELDATNADLIRYTTCNEMPNSSSTHHGGRSKMSSDDDGGGSSHALSFYYASANWNNDPSENCYPRGDI* 170
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lapu4g01508 169 Coils Coil 89 109 - -
Lapu4g01508 169 PANTHER LOB DOMAIN-CONTAINING PROTEIN 4-RELATED 8 127 - -
Lapu4g01508 169 MobiDBLite consensus disorder prediction 119 139 - -
Lapu4g01508 169 Pfam Lateral organ boundaries (LOB) domain 10 106 IPR004883 -
Lapu4g01508 169 ProSiteProfiles LOB domain profile. 9 110 IPR004883 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lapu4g01508 Lapu-Chr4 32243568 32244080 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lapu4g01508 4 130 AS2 family AT3G27650 76.378 2.14e-71 211
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF LOB Lapu4g01508 LOB 2.3e-42 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lapu4g01508 - - gmx:100788656 284.648