Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lapu4g01502 ATGGCTTTTAGATGTCACAGCAACCACTGCAAGTACAAGTGCAGGAATGCTTCATTTGATGTTGTTATCTACACGGTGGCCACCCTCTTGTGTTTCTCTCACTCAGCACTGTCTGATCCAAGAATCTCTGAAGTGGGGTCGTACTGTGGCACTCACAAGGCACCACCAAGTAGTAACTACGTCCCCCTTTTCACCAAAGAAATGGAAAGGCTTCAAGAGCTTGTGAGCAAAAACAACTGGGGCACTCACTCTGAGGGACTGTCATCAGCCACTCCTATGTATGGTTTGGCACAGTGCTTCCAAGATCTTTCCAACCTTGATTGCCTTCAGTGCTTTGCAGCCAGCCGCACCAAGCTACCTCGCTGCCTCACTTCAGTTTCTGCTCACATTTACCTTGATGGTTGCTTCCTTCGCTATGACAACTACAGTTTCTACACTGAGGACACTGACCCTTTGAGGGACACAGTGAACTGCACCACACAGTATGGTGTTATGGCTGGTGAGGCTGAGAGGTCGGTGTTTGGTGAGAGTGTTGGCAAAGTGGTTGAGAATGTGGTGGGGGTGGCAGTAAATGAGGGAAGAGGGTTCGCAGTGGGAGAAGGTGAGGGAGTTTATGCCTTAGCACAGTGCTGGAAAACTGTTGGGGGAAAAGGATGCAGTGAATGCTTGAGGAAAGCTGAAAATGAGGTTAGAGGGTGTTTGCCTAAGAAGGAAGGAAGGGCCTTGAATTCTGGCTGTTATTTGAGATATTCGACTGTTAAGTTCTACAATCAAGGAGGTGAAGATGGGGAAGGAGATGAAAACAATTTCATTGAGATTCCCTCTTATTTGAAGAATTCTAGCTTGAATTACAAATATGAAACTCTTGAGAAGGCCACAGATTATTTCAGCTCTCCAAGAAAAATAGGCCAAGGAGGAGCTGGTTCTGTATTCAAAGGGACTCTCCCAAATGGGGAAGATGTTGCTGTGAAGAGATTGGTCTTCAATAATAGGCAATGGGTGGATGATTTCTTCAATGAAGTGAATCTAATTAGTGGAATAAATCACAAGAACCTTGTCAAGCTATTGGGTTGCAGCATTGAAGGCCCCGAGAGCCTCATTGTGTATGAGTACCTACCTAACAAGAGTTTGGAAACTTTACCAATCAAACAGATTGGCTGA 1161 0.4556 MAFRCHSNHCKYKCRNASFDVVIYTVATLLCFSHSALSDPRISEVGSYCGTHKAPPSSNYVPLFTKEMERLQELVSKNNWGTHSEGLSSATPMYGLAQCFQDLSNLDCLQCFAASRTKLPRCLTSVSAHIYLDGCFLRYDNYSFYTEDTDPLRDTVNCTTQYGVMAGEAERSVFGESVGKVVENVVGVAVNEGRGFAVGEGEGVYALAQCWKTVGGKGCSECLRKAENEVRGCLPKKEGRALNSGCYLRYSTVKFYNQGGEDGEGDENNFIEIPSYLKNSSLNYKYETLEKATDYFSSPRKIGQGGAGSVFKGTLPNGEDVAVKRLVFNNRQWVDDFFNEVNLISGINHKNLVKLLGCSIEGPESLIVYEYLPNKSLETLPIKQIG* 387
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lapu4g01502 386 ProSiteProfiles Gnk2-homologous domain profile. 156 255 IPR002902 -
Lapu4g01502 386 FunFam Cysteine-rich receptor-like protein kinase 2 42 144 - -
Lapu4g01502 386 Pfam Protein tyrosine and serine/threonine kinase 300 379 IPR001245 GO:0004672|GO:0006468
Lapu4g01502 386 Gene3D - 157 255 IPR038408 -
Lapu4g01502 386 Gene3D - 43 144 IPR038408 -
Lapu4g01502 386 FunFam Cysteine-rich receptor-like protein kinase 2 264 371 - -
Lapu4g01502 386 FunFam Cysteine-rich receptor-like protein kinase 3 156 255 - -
Lapu4g01502 386 PANTHER CYSTEINE-RICH RECEPTOR-LIKE PROTEIN KINASE 3 93 379 - -
Lapu4g01502 386 SUPERFAMILY Protein kinase-like (PK-like) 274 384 IPR011009 -
Lapu4g01502 386 ProSiteProfiles Gnk2-homologous domain profile. 42 144 IPR002902 -
Lapu4g01502 386 Gene3D Phosphorylase Kinase; domain 1 264 371 - -
Lapu4g01502 386 Pfam Salt stress response/antifungal 53 142 IPR002902 -
Lapu4g01502 386 Pfam Salt stress response/antifungal 169 252 IPR002902 -
Lapu4g01502 386 ProSiteProfiles Protein kinase domain profile. 296 386 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lapu4g01502 Lapu-Chr4 32183434 32187580 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lapu4g01502 10 378 Receptor kinase-like Gene Family AT5G40380 44.499 2.49e-111 332
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_DLSV Lapu4g01502 PK_Tyr_Ser-Thr 2e-11 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lapu4g01502 - - gmx:100819689 606.675