Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lapu4g01498 ATGAAGAAGGGTCATTCCAACCCCATTACCACCCCTTGTGATGGAGGATCTTCCATTGGAGGCTTTGTTAATGATGTTCGTCACCATCTTATGATGTTGGAACCAAACAAAAAAAAGATGGATGCTTTACATGACAACCAAAAAAACAAAGTCATATGTGGTCTTTCACAAAAAGCCATGTTTGTTCATCCATCTCAAGCTTCCTCTTCCAAATCATCATCACCATCACCTTTTTCTCTCTTTAATGACTATGAATTAATGGTGATGAGTGAATGGGACACTAACCAAAAGGTTAAGGTTAAAAATGATACCAACATTGCTAATGATAACATAATCAAAGGGCAATGGACTCCTCAAGAAGATAGAATTGGTGAATCAATTGGGACCAAAGAAATGGTCACAAATTGCAAGAAGGAATCATGGAGCTTGGAGGAAGACATGATTTTGATCAAAGCCCACCAAGAATTTGGAACAAAATGGTCGAAGATTGCGAAGAGATTGTCTGGAAGGACTGAGAATGGTATCAAGAACCACTGGAATGCCACCATGCGACGCCAAAACTGCAACAAGAACAGCCATGCTCACTACAAAGGGACAATGCTCCATGCCTATGTTAAATGGGTCGCTGCAACTGTAGAATCTGCAAAAGTGCTCAAAAAATCCTCAAACAGAAAGAATAAAAAGGTGTTGAGATGCAATTGTGATGAGCTAGCTCTTCTGCTGAGCTAA 729 0.3992 MKKGHSNPITTPCDGGSSIGGFVNDVRHHLMMLEPNKKKMDALHDNQKNKVICGLSQKAMFVHPSQASSSKSSSPSPFSLFNDYELMVMSEWDTNQKVKVKNDTNIANDNIIKGQWTPQEDRIGESIGTKEMVTNCKKESWSLEEDMILIKAHQEFGTKWSKIAKRLSGRTENGIKNHWNATMRRQNCNKNSHAHYKGTMLHAYVKWVAATVESAKVLKKSSNRKNKKVLRCNCDELALLLS* 243
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lapu4g01498 242 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 135 187 IPR017930 -
Lapu4g01498 242 Pfam Myb-like DNA-binding domain 138 180 IPR001005 -
Lapu4g01498 242 PANTHER MYB PROTEIN-RELATED 135 210 - -
Lapu4g01498 242 Gene3D - 140 202 - -
Lapu4g01498 242 SMART sant 137 185 IPR001005 -
Lapu4g01498 242 ProSiteProfiles Myb-like domain profile. 133 183 IPR001005 -
Lapu4g01498 242 CDD SANT 140 180 IPR001005 -
Lapu4g01498 242 SUPERFAMILY Homeodomain-like 135 188 IPR009057 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lapu4g01498 Lapu-Chr4 32142744 32145229 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lapu4g01498 111 225 MYB Transcription Factor Family AT4G18770 36.913 5.41e-23 94.7
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB-related Lapu4g01498 Myb_DNA-binding 2.9e-14 CL0123