Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lapu4g01496 ATGGCAGCACCAGCACTTTCTCTTGTTGGTGGCTCTCTCCTTTCTGCTTTCCTTCAGGTTGCATTCGACAAGCTGGCTTCTCGTGAACTTCTACACTTCTTTCATGGAAGAAAACTTGACGAGAAGCTTCTGGACAATTTGAACATCATGCTGCTCTCCATCGATGCTCTCGCTGACGACGCAGACCAAAAGCAGTTCCGAGATCCTAACGTGAAAAAGTGGCTTTTTGCTGTCAAAGAGGCTGTCTTTGATGCAGAGGATCTCTTGGAAGAAATAGACTATGAACTCACCAGATGCCAAGTGGAAGCTCAGTCTGAATCTCAGACCTTCTCTTACAAGGTATCAAACTTCTTCAATGCCACTTTCAGTTCATTTAACAAGAAAATTGACTCAGGGTTGAAACAAGTCCTAGAGAAATTAAAATATCTTTCAGAGCAAAAGGGTGCTCTTGGTTTGAAAGAGGGTACTTATTCTGGGGTTGGATCTGGCAGCAATATGTCACAGAGATTGGAATCAAGTAGTTTGGTGGTTGAAAGTGTTATTTATGGCAGAGATGACGACAAAGAAATGATCTTGAATTGGCTCACATCTGAAAATGACAATCGTAACCAGCCATCAGTACTTTCTATTGTGGGCATGGGTGGGTTGGGTAAGACCACACTCGCCCAACATGTATACAATGACCCAAAGATCCACGATGCTAAATTCGATATCAAAGCTTGGGTATGTGTTTCAGATCATTTTGATGTTTTGACGGTGACGAAGACAATTCTTGAGGCAATCACTGATAGAAGAGACGACAGCGGGAACCTAGAAATGGTTCACAAAAAGCTGAAAGAAAAATTGTCAGGAAAGAAATATCTACTTGTGTTGGATGATGTTTGGAACGAAAAACGATACGAATGGGAAGCTGTGCAAACTCCTCTCAGCTATGGGGCTGCAGGAAGTAGAATTCTTGTCACAACACGTGATGAGAAAGTTGCTTCTAACATGAGGTCTAAAGTGCATCGCCTAAAGCATTTACGAGAGGATGAATGCTGGAATGTTTTTGAAAAACACGTATTAAACGATTCTGATCGTCAGTTGAACGATGAACTTAAGGAGATTGGTAGAAGGATAGTTGAGAAGTGCAAAGGATTACCTCTAGCTTTGAAGACAATTGGGTGCCTTTTACACACAAAGTCATCCATTTCAGATTGGCAAAGCATAATGGAAAGTGACATATGGGACTTACCAAAAGAGGTTAGTGATGAAATTATCCCTGCTCTACTATTGAGCTATTACCACCTTCCTTCTCATCTCAAAAGGTGCTTTGCTTACTGTGCCTTATTCCCCAAAGACTATGTGTTTAAGAAGGAGAAGTTAATTTTGTTGTGGATGGCCGAATGCCCTCAGCAAATTAGACACCTAGAGGTTGGTGAACAGTACTTTAATGATCTATTGTCAAGATCTTTCTTTCAACAATTAAGCACTGAAAGACATTTCGTCATGCATGACCTTTTGAATGATTTGGCAAAATATGTTTGTGGAGACATCTGTTTTAGGTTGAAATTTGATAAAGGCCACAACATACCGAAAACAACCCGGCATTTTTCATTTTCAATCAATGACGTCAAATCTTTTGATGGTTTTGGGAGTTTAACTGATGCTAAAAGATTGCGTTCATTTATTTCAATAAAACATTTCCTTCCTTGGCCATTCAAGATTTCGATACATGATTTGTTCTCCAAGATGAAGTTTTTACGCGTGTTATCTTTGAGTTTCTGGGGCCTTAGAGAGGTCCCAGATTCCGTAAGTCATCTTAAACTTCTCCATTCGTTAGACCTTTCGTGTACTCGTATACGCAACCTACCAGACTCACTATGTTTGCTCTATAACTTGCTAATACTGAAGTTGAACCATTGCATCTATCTGGAGGAGTTTCCCTCAAATTTGCATAAACTCACCAAATTGCGTTGCCTTGAATTTGAAAGTACAAACGTGACAAAGATGCCAATGCATTTTGGAGAATTGAAGAATCTTCAAGTACTTAGTAAGTTTTGTGTCGATAGAAATAGCGAGTTCAGTACTAAGCATCTAGGAGGACTCAATCTTCATGGAGACCTATTAATTAAGGAGGTGCAGAATATTGTGAATCCTTCGGATGCATTAGAAGCAAATTTGAAAAATAAACACCTTACGAAGCTAATGTTAGAATGGAATTCGAACTACATCCCTGATGATCCAAGGAAAGCAAAGAAAGTACTTGAGAATCTACTACCTTACAAACAATTGGAGAGTTTAGATATCAGGAACTATGGTGGTATACAATTCCCAAATTGGGTATTCGATAATTCATTATCAAATCTGGCGTCCCTACAGTTGGTGGACTGTAAATATTGCCTATGTTTGCCTGCCCTTGGACGGTTGTCATCTCTGAAGAGCCTCTTTATGGGTTATTAG 2442 0.3976 MAAPALSLVGGSLLSAFLQVAFDKLASRELLHFFHGRKLDEKLLDNLNIMLLSIDALADDADQKQFRDPNVKKWLFAVKEAVFDAEDLLEEIDYELTRCQVEAQSESQTFSYKVSNFFNATFSSFNKKIDSGLKQVLEKLKYLSEQKGALGLKEGTYSGVGSGSNMSQRLESSSLVVESVIYGRDDDKEMILNWLTSENDNRNQPSVLSIVGMGGLGKTTLAQHVYNDPKIHDAKFDIKAWVCVSDHFDVLTVTKTILEAITDRRDDSGNLEMVHKKLKEKLSGKKYLLVLDDVWNEKRYEWEAVQTPLSYGAAGSRILVTTRDEKVASNMRSKVHRLKHLREDECWNVFEKHVLNDSDRQLNDELKEIGRRIVEKCKGLPLALKTIGCLLHTKSSISDWQSIMESDIWDLPKEVSDEIIPALLLSYYHLPSHLKRCFAYCALFPKDYVFKKEKLILLWMAECPQQIRHLEVGEQYFNDLLSRSFFQQLSTERHFVMHDLLNDLAKYVCGDICFRLKFDKGHNIPKTTRHFSFSINDVKSFDGFGSLTDAKRLRSFISIKHFLPWPFKISIHDLFSKMKFLRVLSLSFWGLREVPDSVSHLKLLHSLDLSCTRIRNLPDSLCLLYNLLILKLNHCIYLEEFPSNLHKLTKLRCLEFESTNVTKMPMHFGELKNLQVLSKFCVDRNSEFSTKHLGGLNLHGDLLIKEVQNIVNPSDALEANLKNKHLTKLMLEWNSNYIPDDPRKAKKVLENLLPYKQLESLDIRNYGGIQFPNWVFDNSLSNLASLQLVDCKYCLCLPALGRLSSLKSLFMGY* 814
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lapu4g01496 813 Gene3D Ribonuclease Inhibitor 547 813 IPR032675 -
Lapu4g01496 813 Gene3D - 33 130 - -
Lapu4g01496 813 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 165 441 IPR027417 -
Lapu4g01496 813 Pfam NB-ARC domain 185 405 IPR002182 GO:0043531
Lapu4g01496 813 SUPERFAMILY L domain-like 496 811 - -
Lapu4g01496 813 PRINTS Disease resistance protein signature 377 391 - -
Lapu4g01496 813 PRINTS Disease resistance protein signature 207 222 - -
Lapu4g01496 813 PRINTS Disease resistance protein signature 281 295 - -
Lapu4g01496 813 PRINTS Disease resistance protein signature 778 794 - -
Lapu4g01496 813 PANTHER DISEASE RESISTANCE PROTEIN RP 63 809 IPR044974 GO:0006952
Lapu4g01496 813 Gene3D - 163 339 IPR027417 -
Lapu4g01496 813 Gene3D - 340 425 IPR042197 -
Lapu4g01496 813 FunFam Probable disease resistance protein At1g61300 164 336 - -
Lapu4g01496 813 Pfam Rx N-terminal domain 14 107 IPR041118 -
Lapu4g01496 813 Gene3D - 426 507 IPR036388 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lapu4g01496 Lapu-Chr4 32136781 32141808 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lapu4g01496 591 690 WRKY Transcription Factor Family AT4G12020 35.644 1.96e-08 56.2
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lapu4g01496 - - pvu:PHAVU_004G015800g 1151.35